[R-sig-ME] Problem installing RLRsim

Margaret Mackinnon mmackinnon at kilifi.kemri-wellcome.org
Fri Jun 12 16:33:36 CEST 2009 

Thanks.  I turned off McAfee virus software and it worked.

Mgt

Dr. Margaret Mackinnon

KEMRI-Wellcome Collaborative Programme, Coast                        
PO Box 230   
Kilifi
Kenya
mmackinnon at kilifi.kemri-wellcome.org
+ 254 417 522535 Ext 228
+ 254 417 522390


>>> Chuck Cleland <ccleland at optonline.net> 12 June 2009 16:16 >>>
On 6/12/2009 8:00 AM, Margaret Mackinnon wrote:
> Hi
> 
> I am trying to install RLRsim.  I get an error message (below) saying that access is denied to one of the files
> 
> Error:  Access is denied.
> Cannot create C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\RLRsim.dll
> 
> Leow this message is the log when I try to use Winzip to unpack it. I get the same message as above when installing it through the R-GUI.
> 
> Thanks in advance for advice.

  It works for me using install.packages():

> install.packages("RLRsim")
--- Please select a CRAN mirror for use in this session ---
trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.9/RLRsim_2.0-2.zip'
Content type 'application/zip' length 254255 bytes (248 Kb)
opened URL
downloaded 248 Kb

package 'RLRsim' successfully unpacked and MD5 sums checked

The downloaded packages are in
        C:\Documents and Settings\Chuck\Local
Settings\Temp\RtmpDyABNe\downloaded_packages
updating HTML package descriptions

> library(RLRsim)

> library(mgcv)
This is mgcv  1.5-5 . For overview type `help("mgcv-package")'.

> data(trees)

> m.q<-gamm(I(log(Volume)) ~ Height + s(Girth, m = 3), data = trees,
method = "REML")$lme

Loading required package: nlme

> exactRLRT(m.q)

        simulated finite sample distribution of RLRT.  (p-value based on
10000 simulated values)

data:
RLRT = 0, p-value = 1

> sessionInfo()
R version 2.9.0 Patched (2009-05-23 r48600)
i386-pc-mingw32

locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] nlme_3.1-92  mgcv_1.5-5   RLRsim_2.0-2

loaded via a namespace (and not attached):
[1] grid_2.9.0      lattice_0.17-25 tools_2.9.0

> Margaret
> 
> Extracting to "C:\Program Files\R\R-2.8.1\library\RLRsim\"
> Use Path: yes   Overlay Files: no
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\chtml\
> Extracting RLRsim.chm
> Extracting CONTENTS
> Extracting DESCRIPTION
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\help\
> Extracting AnIndex
> Extracting exactLRT
> Extracting exactRLRT
> Extracting extract.lmeDesign
> Extracting LRTSim
> Extracting RLRsim-package
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\html\
> Extracting 00Index.html
> Extracting exactLRT.html
> Extracting exactRLRT.html
> Extracting extract.lmeDesign.html
> Extracting LRTSim.html
> Extracting RLRsim-package.html
> Extracting INDEX
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\latex\
> Extracting exactLRT.tex
> Extracting exactRLRT.tex
> Extracting extract.lmeDesign.tex
> Extracting LRTSim.tex
> Extracting RLRsim-package.tex
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\
> Error:  Access is denied.
> Cannot create C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\RLRsim.dll
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\man\
> Extracting RLRsim.Rd.gz
> Extracting MD5
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\Meta\
> Extracting hsearch.rds
> Extracting nsInfo.rds
> Extracting package.rds
> Extracting Rd.rds
> Extracting NAMESPACE
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\R\
> Extracting RLRsim
> Extracting RLRsim.rdb
> Extracting RLRsim.rdx
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\R-ex\
> Extracting exactLRT.R
> Extracting exactRLRT.R
> Extracting extract.lmeDesign.R
> Extracting LRTSim.R
> 
> 
> 
> Dr. Margaret Mackinnon
> 
> KEMRI-Wellcome Collaborative Programme, Coast                        
> PO Box 230   
> Kilifi
> Kenya
> mmackinnon at kilifi.kemri-wellcome.org 
> + 254 417 522535 Ext 228
> + 254 417 522390
> 
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-- 
Chuck Cleland, Ph.D.
NDRI, Inc. (www.ndri.org)
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which is confidential. It is intended only for the use of the named
recipient. If you have received this e-mail in error, please let us know
by replying to the sender, and immediately delete it from your system.
Please note, that in these circumstances, the use, disclosure,
distribution or copying of this information is strictly prohibited. We
apologize for any inconvenience that may have been caused to you.
KEMRI-Wellcome Trust Programmecannot accept any responsibility for the accuracy
or completeness of this message as it has been transmitted over a public
network. KEMRI-Wellcome Trust Programme reserves the right to monitor all incoming and
outgoing email traffic. Although the Programme has taken reasonable
precautions to ensure no viruses are present in emails, it cannot
accept responsibility for any loss or damage arising from the use of the
email or attachments. Any views expressed in this message are those of
the individual sender, except where the sender specifically states them
to be the views of KEMRI- Wellcome Trust Programme".

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