[R-sig-ME] Problem installing RLRsim

[Chuck Cleland]

On 6/12/2009 8:00 AM, Margaret Mackinnon wrote:
> Hi
> 
> I am trying to install RLRsim.  I get an error message (below) saying that access is denied to one of the files
> 
> Error:  Access is denied.
> Cannot create C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\RLRsim.dll
> 
> Leow this message is the log when I try to use Winzip to unpack it. I get the same message as above when installing it through the R-GUI.
> 
> Thanks in advance for advice.

  It works for me using install.packages():

> install.packages("RLRsim")
--- Please select a CRAN mirror for use in this session ---
trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.9/RLRsim_2.0-2.zip'
Content type 'application/zip' length 254255 bytes (248 Kb)
opened URL
downloaded 248 Kb

package 'RLRsim' successfully unpacked and MD5 sums checked

The downloaded packages are in
        C:\Documents and Settings\Chuck\Local
Settings\Temp\RtmpDyABNe\downloaded_packages
updating HTML package descriptions

> library(RLRsim)

> library(mgcv)
This is mgcv  1.5-5 . For overview type `help("mgcv-package")'.

> data(trees)

> m.q<-gamm(I(log(Volume)) ~ Height + s(Girth, m = 3), data = trees,
method = "REML")$lme

Loading required package: nlme

> exactRLRT(m.q)

        simulated finite sample distribution of RLRT.  (p-value based on
10000 simulated values)

data:
RLRT = 0, p-value = 1

> sessionInfo()
R version 2.9.0 Patched (2009-05-23 r48600)
i386-pc-mingw32

locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] nlme_3.1-92  mgcv_1.5-5   RLRsim_2.0-2

loaded via a namespace (and not attached):
[1] grid_2.9.0      lattice_0.17-25 tools_2.9.0

> Margaret
> 
> Extracting to "C:\Program Files\R\R-2.8.1\library\RLRsim\"
> Use Path: yes   Overlay Files: no
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\chtml\
> Extracting RLRsim.chm
> Extracting CONTENTS
> Extracting DESCRIPTION
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\help\
> Extracting AnIndex
> Extracting exactLRT
> Extracting exactRLRT
> Extracting extract.lmeDesign
> Extracting LRTSim
> Extracting RLRsim-package
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\html\
> Extracting 00Index.html
> Extracting exactLRT.html
> Extracting exactRLRT.html
> Extracting extract.lmeDesign.html
> Extracting LRTSim.html
> Extracting RLRsim-package.html
> Extracting INDEX
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\latex\
> Extracting exactLRT.tex
> Extracting exactRLRT.tex
> Extracting extract.lmeDesign.tex
> Extracting LRTSim.tex
> Extracting RLRsim-package.tex
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\
> Error:  Access is denied.
> Cannot create C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\RLRsim.dll
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\man\
> Extracting RLRsim.Rd.gz
> Extracting MD5
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\Meta\
> Extracting hsearch.rds
> Extracting nsInfo.rds
> Extracting package.rds
> Extracting Rd.rds
> Extracting NAMESPACE
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\R\
> Extracting RLRsim
> Extracting RLRsim.rdb
> Extracting RLRsim.rdx
> creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\R-ex\
> Extracting exactLRT.R
> Extracting exactRLRT.R
> Extracting extract.lmeDesign.R
> Extracting LRTSim.R
> 
> 
> 
> Dr. Margaret Mackinnon
> 
> KEMRI-Wellcome Collaborative Programme, Coast                        
> PO Box 230   
> Kilifi
> Kenya
> mmackinnon at kilifi.kemri-wellcome.org
> + 254 417 522535 Ext 228
> + 254 417 522390
> 
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-- 
Chuck Cleland, Ph.D.
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