[R-SIG-Mac] List of unnecessary messages when I plot something in R from Terminal
Prof Brian Ripley
r|p|ey @end|ng |rom @t@t@@ox@@c@uk
Sun Feb 12 12:33:13 CET 2023
Please do read ?sessionInfo
Where R was compiled under macOS 10.x (as the CRAN Intel
distributions have been) but running under ‘Big Sur’ or later,
macOS reports itself as ‘10.16’ (which R recognizes as ‘Big Sur
...’) and not ‘11.x’ or later.
This is only an issue on Intel binary distributions: the arm64 ones are
built on macOS 11.
On 12/02/2023 09:48, Calboli Federico (LUKE) wrote:
> Pretty use R does disinguish MacOS versions:
>
>> sessionInfo()
> R version 4.2.2 (2022-10-31)
> Platform: aarch64-apple-darwin20 (64-bit)
> Running under: macOS Ventura 13.2
>
> for me. So if one is on Ventura but R thinks it is running on a different OS, that’s a starting point right there.
>
> BW
>
> F
>
>> On 11. Feb 2023, at 23.53, Jeff Newmiller <jdnewmil using dcn.davis.ca.us> wrote:
>>
>> Operating systems are designed to be as backward-compatible as possible... R Core doesn't generally know what distinguishing features will identify a new OS until it is released, nor what it will be called, so R has a handicap.
>>
>> On February 11, 2023 1:12:42 PM PST, Christofer Bogaso <bogaso.christofer using gmail.com> wrote:
>>> Actually when I check from the Apple icon, then I see that I am
>>> actually running Ventura
>>>
>>> For some reason, R's sessionInfo() is reporting that I am running Big Sur.
>>>
>>> Not sure why R is reporting wrong. Thanks,
'macOS Big Sur ...' is not 'wrong'.
>>> On Sun, Feb 12, 2023 at 2:38 AM Christofer Bogaso
>>> <bogaso.christofer using gmail.com> wrote:
>>>>
>>>> Hi,
>>>>
>>>> I am running Big Sur. Below is my sessionInfo()
>>>>
>>>>> sessionInfo()
>>>>
>>>> R version 4.2.1 (2022-06-23)
>>>>
>>>> Platform: x86_64-apple-darwin17.0 (64-bit)
>>>>
>>>> Running under: macOS Big Sur ... 10.16
>>>>
>>>>
>>>> Matrix products: default
>>>>
>>>> BLAS: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib
>>>>
>>>> LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
>>>>
>>>>
>>>> locale:
>>>>
>>>> [1] C/UTF-8/C/C/C/C
>>>>
>>>>
>>>> attached base packages:
>>>>
>>>> [1] stats graphics grDevices utils datasets methods base
>>>>
>>>>
>>>> loaded via a namespace (and not attached):
>>>>
>>>> [1] compiler_4.2.1
>>>>
>>>> On Sun, Feb 12, 2023 at 1:55 AM Simon Urbanek
>>>> <simon.urbanek using r-project.org> wrote:
>>>>>
>>>>> Christofer,
>>>>>
>>>>> yes, unfortunately this is a known bug in macOS Ventura affecting a lot of command-line programs that use GUI. Do not upgrade to Ventura (usually a good advice given the long list of known bugs in Ventura) or wait for a fix from Apple.
>>>>>
>>>>> Cheers,
>>>>> Simon
>>>>>
>>>>>
>>>>>
>>>>>> On Feb 11, 2023, at 11:28 PM, Christofer Bogaso <bogaso.christofer using gmail.com> wrote:
>>>>>>
>>>>>> Hi,
>>>>>>
>>>>>> When I plot something in R, then it open Quartz and in the console I
>>>>>> see below messages
>>>>>>
>>>>>>> plot(1:4)
>>>>>>
>>>>>>> 1 HIToolbox 0x00007ff8229a2726 _ZN15MenuBarInstance22EnsureAutoShowObserverEv + 102
>>>>>>
>>>>>> 2 HIToolbox 0x00007ff8229a22b8
>>>>>> _ZN15MenuBarInstance14EnableAutoShowEv + 52
>>>>>>
>>>>>> 3 HIToolbox 0x00007ff822946908
>>>>>> SetMenuBarObscured + 408
>>>>>>
>>>>>> 4 HIToolbox 0x00007ff8229464ca
>>>>>> _ZN13HIApplication15HandleActivatedEP14OpaqueEventRefhP15OpaqueWindowPtrh
>>>>>> + 164
>>>>>>
>>>>>> 5 HIToolbox 0x00007ff822940996
>>>>>> _ZN13HIApplication13EventObserverEjP14OpaqueEventRefPv + 252
>>>>>>
>>>>>> 6 HIToolbox 0x00007ff822908bd2
>>>>>> _NotifyEventLoopObservers + 153
>>>>>>
>>>>>> 7 HIToolbox 0x00007ff8229403e6
>>>>>> AcquireEventFromQueue + 494
>>>>>>
>>>>>> 8 HIToolbox 0x00007ff82292f3ec
>>>>>> ReceiveNextEventCommon + 285
>>>>>>
>>>>>> 9 HIToolbox 0x00007ff82292f2b3
>>>>>> _BlockUntilNextEventMatchingListInModeWithFilter + 70
>>>>>>
>>>>>> 10 AppKit 0x00007ff81c136f33 _DPSNextEvent + 909
>>>>>>
>>>>>> 11 AppKit 0x00007ff81c135db4
>>>>>> -[NSApplication(NSEvent)
>>>>>> _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219
>>>>>>
>>>>>> 12 grDevices.so 0x00000001086f7a3b input_handler + 155
>>>>>>
>>>>>> 13 libR.dylib 0x0000000108b142cf
>>>>>> Rstd_ReadConsole + 2127
>>>>>>
>>>>>> 14 libR.dylib 0x0000000108a15b74
>>>>>> Rf_ReplIteration + 100
>>>>>>
>>>>>> 15 libR.dylib 0x0000000108a174b1 R_ReplConsole + 161
>>>>>>
>>>>>> 16 libR.dylib 0x0000000108a17402 run_Rmainloop + 82
>>>>>>
>>>>>> 17 libR.dylib 0x0000000108a1753e Rf_mainloop + 14
>>>>>>
>>>>>> 18 R 0x000000010847af5b main + 27
>>>>>>
>>>>>> 19 dyld 0x00007ff818bde310 start + 2432
>>>>>>
>>>>>> 1 HIToolbox 0x00007ff822aa952b
>>>>>> _ZN15MenuBarInstance21IsAutoShowHideAllowedEv + 259
>>>>>>
>>>>>> 2 HIToolbox 0x00007ff8229a233e
>>>>>> _ZN15MenuBarInstance24UpdateAutoShowVisibilityE5Pointh + 34
>>>>>>
>>>>>> 3 HIToolbox 0x00007ff8229117a4
>>>>>> _ZN15MenuBarInstance16ForEachMenuBarDoEU13block_pointerFvPS_E + 46
>>>>>>
>>>>>> 4 HIToolbox 0x00007ff8229a293d
>>>>>> _ZN15MenuBarInstance20AutoShowHideObserverEjP14OpaqueEventRefPv + 165
>>>>>>
>>>>>> 5 HIToolbox 0x00007ff822908bd2
>>>>>> _NotifyEventLoopObservers + 153
>>>>>>
>>>>>> 6 HIToolbox 0x00007ff82293afb8
>>>>>> PostEventToQueueInternal + 700
>>>>>>
>>>>>> 7 HIToolbox 0x00007ff82293c871
>>>>>> _ZL29CreateAndPostEventWithCGEventP9__CGEventjhP17__CFMachPortBoost +
>>>>>> 404
>>>>>>
>>>>>> 8 HIToolbox 0x00007ff822948ee9
>>>>>> _ZL15Convert1CGEventh + 246
>>>>>>
>>>>>> 9 HIToolbox 0x00007ff822948d91
>>>>>> _ZL16MainLoopObserverjP14OpaqueEventRefPv + 41
>>>>>>
>>>>>> 10 HIToolbox 0x00007ff822908bd2
>>>>>> _NotifyEventLoopObservers + 153
>>>>>>
>>>>>> 11 HIToolbox 0x00007ff82292f726
>>>>>> RunCurrentEventLoopInMode + 228
>>>>>>
>>>>>> 12 HIToolbox 0x00007ff82292f396
>>>>>> ReceiveNextEventCommon + 199
>>>>>>
>>>>>> 13 HIToolbox 0x00007ff82292f2b3
>>>>>> _BlockUntilNextEventMatchingListInModeWithFilter + 70
>>>>>>
>>>>>> 14 AppKit 0x00007ff81c136f33 _DPSNextEvent + 909
>>>>>>
>>>>>> 15 AppKit 0x00007ff81c135db4
>>>>>> -[NSApplication(NSEvent)
>>>>>> _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219
>>>>>>
>>>>>> 16 grDevices.so 0x00000001086f7a3b input_handler + 155
>>>>>>
>>>>>> 17 libR.dylib 0x0000000108b142cf
>>>>>> Rstd_ReadConsole + 2127
>>>>>>
>>>>>> 18 libR.dylib 0x0000000108a15b74
>>>>>> Rf_ReplIteration + 100
>>>>>>
>>>>>> 19 libR.dylib 0x0000000108a174b1 R_ReplConsole + 161
>>>>>>
>>>>>> 20 libR.dylib 0x0000000108a17402 run_Rmainloop + 82
>>>>>>
>>>>>> 21 libR.dylib 0x0000000108a1753e Rf_mainloop + 14
>>>>>>
>>>>>> 22 R 0x000000010847af5b main + 27
>>>>>>
>>>>>> 23 dyld 0x00007ff818bde310 start + 2432
>>>>>>
>>>>>> 1 HIToolbox 0x00007ff82292f0c2
>>>>>> _ZN15MenuBarInstance22RemoveAutoShowObserverEv + 30
>>>>>>
>>>>>> 2 HIToolbox 0x00007ff8229467e3
>>>>>> SetMenuBarObscured + 115
>>>>>>
>>>>>> 3 HIToolbox 0x00007ff82294d29e
>>>>>> _ZN13HIApplication11FrontUILostEv + 34
>>>>>>
>>>>>> 4 HIToolbox 0x00007ff822946622
>>>>>> _ZN13HIApplication15HandleActivatedEP14OpaqueEventRefhP15OpaqueWindowPtrh
>>>>>> + 508
>>>>>>
>>>>>> 5 HIToolbox 0x00007ff822940950
>>>>>> _ZN13HIApplication13EventObserverEjP14OpaqueEventRefPv + 182
>>>>>>
>>>>>> 6 HIToolbox 0x00007ff822908bd2
>>>>>> _NotifyEventLoopObservers + 153
>>>>>>
>>>>>> 7 HIToolbox 0x00007ff8229403e6
>>>>>> AcquireEventFromQueue + 494
>>>>>>
>>>>>> 8 HIToolbox 0x00007ff82292f3ec
>>>>>> ReceiveNextEventCommon + 285
>>>>>>
>>>>>> 9 HIToolbox 0x00007ff82292f2b3
>>>>>> _BlockUntilNextEventMatchingListInModeWithFilter + 70
>>>>>>
>>>>>> 10 AppKit 0x00007ff81c136f33 _DPSNextEvent + 909
>>>>>>
>>>>>> 11 AppKit 0x00007ff81c135db4
>>>>>> -[NSApplication(NSEvent)
>>>>>> _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219
>>>>>>
>>>>>> 12 grDevices.so 0x00000001086f7a77 input_handler + 215
>>>>>>
>>>>>> 13 libR.dylib 0x0000000108b142cf
>>>>>> Rstd_ReadConsole + 2127
>>>>>>
>>>>>> 14 libR.dylib 0x0000000108a15b74
>>>>>> Rf_ReplIteration + 100
>>>>>>
>>>>>> 15 libR.dylib 0x0000000108a174b1 R_ReplConsole + 161
>>>>>>
>>>>>> 16 libR.dylib 0x0000000108a17402 run_Rmainloop + 82
>>>>>>
>>>>>> 17 libR.dylib 0x0000000108a1753e Rf_mainloop + 14
>>>>>>
>>>>>> 18 R 0x000000010847af5b main + 27
>>>>>>
>>>>>> 19 dyld 0x00007ff818bde310 start + 2432
>>>>>>
>>>>>> I am using R through Terminal in my Mac
>>>>>>
>>>>>>> sessionInfo()
>>>>>>
>>>>>> R version 4.2.1 (2022-06-23)
>>>>>>
>>>>>> Platform: x86_64-apple-darwin17.0 (64-bit)
>>>>>>
>>>>>> Running under: macOS Big Sur ... 10.16
>>>>>>
>>>>>>
>>>>>> Matrix products: default
>>>>>>
>>>>>> BLAS: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib
>>>>>>
>>>>>> LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
>>>>>>
>>>>>>
>>>>>> locale:
>>>>>>
>>>>>> [1] C/UTF-8/C/C/C/C
>>>>>>
>>>>>>
>>>>>> attached base packages:
>>>>>>
>>>>>> [1] stats graphics grDevices utils datasets methods base
>>>>>>
>>>>>>
>>>>>> loaded via a namespace (and not attached):
>>>>>>
>>>>>> [1] compiler_4.2.1
>>>>>>
>>>>>> Is there any way to stop/hide these messages?
>>>>>>
>>>>>> Thanks for your time.
>>>>>>
>>>>>> _______________________________________________
>>>>>> R-SIG-Mac mailing list
>>>>>> R-SIG-Mac using r-project.org
>>>>>> https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fr-sig-mac&data=05%7C01%7Cfederico.calboli%40luke.fi%7C6db214f696cc44b3479f08db0c7a7a90%7C7c14dfa4c0fc47259f0476a443deb095%7C0%7C0%7C638117492412891495%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=fZG8DuMlBIdt3G%2BNVj9F2bcsDJQFPYQICcOz%2F2Wetl4%3D&reserved=0
>>>>>>
>>>>>
>>>
>>> _______________________________________________
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>>
>> --
>> Sent from my phone. Please excuse my brevity.
>>
>> _______________________________________________
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>
> --
> Federico Calboli
> Tutkija
> Genomiikka ja jalostus, Luonnonvarakeskus
> +358295322656
>
>
>
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--
Brian D. Ripley, ripley using stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford
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