[R-SIG-Mac] List of unnecessary messages when I plot something in R from Terminal
Calboli Federico (LUKE)
|eder|co@c@|bo|| @end|ng |rom |uke@||
Sun Feb 12 10:48:09 CET 2023
Pretty use R does disinguish MacOS versions:
> sessionInfo()
R version 4.2.2 (2022-10-31)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Ventura 13.2
for me. So if one is on Ventura but R thinks it is running on a different OS, that’s a starting point right there.
BW
F
> On 11. Feb 2023, at 23.53, Jeff Newmiller <jdnewmil using dcn.davis.ca.us> wrote:
>
> Operating systems are designed to be as backward-compatible as possible... R Core doesn't generally know what distinguishing features will identify a new OS until it is released, nor what it will be called, so R has a handicap.
>
> On February 11, 2023 1:12:42 PM PST, Christofer Bogaso <bogaso.christofer using gmail.com> wrote:
>> Actually when I check from the Apple icon, then I see that I am
>> actually running Ventura
>>
>> For some reason, R's sessionInfo() is reporting that I am running Big Sur.
>>
>> Not sure why R is reporting wrong. Thanks,
>>
>> On Sun, Feb 12, 2023 at 2:38 AM Christofer Bogaso
>> <bogaso.christofer using gmail.com> wrote:
>>>
>>> Hi,
>>>
>>> I am running Big Sur. Below is my sessionInfo()
>>>
>>>> sessionInfo()
>>>
>>> R version 4.2.1 (2022-06-23)
>>>
>>> Platform: x86_64-apple-darwin17.0 (64-bit)
>>>
>>> Running under: macOS Big Sur ... 10.16
>>>
>>>
>>> Matrix products: default
>>>
>>> BLAS: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib
>>>
>>> LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
>>>
>>>
>>> locale:
>>>
>>> [1] C/UTF-8/C/C/C/C
>>>
>>>
>>> attached base packages:
>>>
>>> [1] stats graphics grDevices utils datasets methods base
>>>
>>>
>>> loaded via a namespace (and not attached):
>>>
>>> [1] compiler_4.2.1
>>>
>>> On Sun, Feb 12, 2023 at 1:55 AM Simon Urbanek
>>> <simon.urbanek using r-project.org> wrote:
>>>>
>>>> Christofer,
>>>>
>>>> yes, unfortunately this is a known bug in macOS Ventura affecting a lot of command-line programs that use GUI. Do not upgrade to Ventura (usually a good advice given the long list of known bugs in Ventura) or wait for a fix from Apple.
>>>>
>>>> Cheers,
>>>> Simon
>>>>
>>>>
>>>>
>>>>> On Feb 11, 2023, at 11:28 PM, Christofer Bogaso <bogaso.christofer using gmail.com> wrote:
>>>>>
>>>>> Hi,
>>>>>
>>>>> When I plot something in R, then it open Quartz and in the console I
>>>>> see below messages
>>>>>
>>>>>> plot(1:4)
>>>>>
>>>>>> 1 HIToolbox 0x00007ff8229a2726 _ZN15MenuBarInstance22EnsureAutoShowObserverEv + 102
>>>>>
>>>>> 2 HIToolbox 0x00007ff8229a22b8
>>>>> _ZN15MenuBarInstance14EnableAutoShowEv + 52
>>>>>
>>>>> 3 HIToolbox 0x00007ff822946908
>>>>> SetMenuBarObscured + 408
>>>>>
>>>>> 4 HIToolbox 0x00007ff8229464ca
>>>>> _ZN13HIApplication15HandleActivatedEP14OpaqueEventRefhP15OpaqueWindowPtrh
>>>>> + 164
>>>>>
>>>>> 5 HIToolbox 0x00007ff822940996
>>>>> _ZN13HIApplication13EventObserverEjP14OpaqueEventRefPv + 252
>>>>>
>>>>> 6 HIToolbox 0x00007ff822908bd2
>>>>> _NotifyEventLoopObservers + 153
>>>>>
>>>>> 7 HIToolbox 0x00007ff8229403e6
>>>>> AcquireEventFromQueue + 494
>>>>>
>>>>> 8 HIToolbox 0x00007ff82292f3ec
>>>>> ReceiveNextEventCommon + 285
>>>>>
>>>>> 9 HIToolbox 0x00007ff82292f2b3
>>>>> _BlockUntilNextEventMatchingListInModeWithFilter + 70
>>>>>
>>>>> 10 AppKit 0x00007ff81c136f33 _DPSNextEvent + 909
>>>>>
>>>>> 11 AppKit 0x00007ff81c135db4
>>>>> -[NSApplication(NSEvent)
>>>>> _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219
>>>>>
>>>>> 12 grDevices.so 0x00000001086f7a3b input_handler + 155
>>>>>
>>>>> 13 libR.dylib 0x0000000108b142cf
>>>>> Rstd_ReadConsole + 2127
>>>>>
>>>>> 14 libR.dylib 0x0000000108a15b74
>>>>> Rf_ReplIteration + 100
>>>>>
>>>>> 15 libR.dylib 0x0000000108a174b1 R_ReplConsole + 161
>>>>>
>>>>> 16 libR.dylib 0x0000000108a17402 run_Rmainloop + 82
>>>>>
>>>>> 17 libR.dylib 0x0000000108a1753e Rf_mainloop + 14
>>>>>
>>>>> 18 R 0x000000010847af5b main + 27
>>>>>
>>>>> 19 dyld 0x00007ff818bde310 start + 2432
>>>>>
>>>>> 1 HIToolbox 0x00007ff822aa952b
>>>>> _ZN15MenuBarInstance21IsAutoShowHideAllowedEv + 259
>>>>>
>>>>> 2 HIToolbox 0x00007ff8229a233e
>>>>> _ZN15MenuBarInstance24UpdateAutoShowVisibilityE5Pointh + 34
>>>>>
>>>>> 3 HIToolbox 0x00007ff8229117a4
>>>>> _ZN15MenuBarInstance16ForEachMenuBarDoEU13block_pointerFvPS_E + 46
>>>>>
>>>>> 4 HIToolbox 0x00007ff8229a293d
>>>>> _ZN15MenuBarInstance20AutoShowHideObserverEjP14OpaqueEventRefPv + 165
>>>>>
>>>>> 5 HIToolbox 0x00007ff822908bd2
>>>>> _NotifyEventLoopObservers + 153
>>>>>
>>>>> 6 HIToolbox 0x00007ff82293afb8
>>>>> PostEventToQueueInternal + 700
>>>>>
>>>>> 7 HIToolbox 0x00007ff82293c871
>>>>> _ZL29CreateAndPostEventWithCGEventP9__CGEventjhP17__CFMachPortBoost +
>>>>> 404
>>>>>
>>>>> 8 HIToolbox 0x00007ff822948ee9
>>>>> _ZL15Convert1CGEventh + 246
>>>>>
>>>>> 9 HIToolbox 0x00007ff822948d91
>>>>> _ZL16MainLoopObserverjP14OpaqueEventRefPv + 41
>>>>>
>>>>> 10 HIToolbox 0x00007ff822908bd2
>>>>> _NotifyEventLoopObservers + 153
>>>>>
>>>>> 11 HIToolbox 0x00007ff82292f726
>>>>> RunCurrentEventLoopInMode + 228
>>>>>
>>>>> 12 HIToolbox 0x00007ff82292f396
>>>>> ReceiveNextEventCommon + 199
>>>>>
>>>>> 13 HIToolbox 0x00007ff82292f2b3
>>>>> _BlockUntilNextEventMatchingListInModeWithFilter + 70
>>>>>
>>>>> 14 AppKit 0x00007ff81c136f33 _DPSNextEvent + 909
>>>>>
>>>>> 15 AppKit 0x00007ff81c135db4
>>>>> -[NSApplication(NSEvent)
>>>>> _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219
>>>>>
>>>>> 16 grDevices.so 0x00000001086f7a3b input_handler + 155
>>>>>
>>>>> 17 libR.dylib 0x0000000108b142cf
>>>>> Rstd_ReadConsole + 2127
>>>>>
>>>>> 18 libR.dylib 0x0000000108a15b74
>>>>> Rf_ReplIteration + 100
>>>>>
>>>>> 19 libR.dylib 0x0000000108a174b1 R_ReplConsole + 161
>>>>>
>>>>> 20 libR.dylib 0x0000000108a17402 run_Rmainloop + 82
>>>>>
>>>>> 21 libR.dylib 0x0000000108a1753e Rf_mainloop + 14
>>>>>
>>>>> 22 R 0x000000010847af5b main + 27
>>>>>
>>>>> 23 dyld 0x00007ff818bde310 start + 2432
>>>>>
>>>>> 1 HIToolbox 0x00007ff82292f0c2
>>>>> _ZN15MenuBarInstance22RemoveAutoShowObserverEv + 30
>>>>>
>>>>> 2 HIToolbox 0x00007ff8229467e3
>>>>> SetMenuBarObscured + 115
>>>>>
>>>>> 3 HIToolbox 0x00007ff82294d29e
>>>>> _ZN13HIApplication11FrontUILostEv + 34
>>>>>
>>>>> 4 HIToolbox 0x00007ff822946622
>>>>> _ZN13HIApplication15HandleActivatedEP14OpaqueEventRefhP15OpaqueWindowPtrh
>>>>> + 508
>>>>>
>>>>> 5 HIToolbox 0x00007ff822940950
>>>>> _ZN13HIApplication13EventObserverEjP14OpaqueEventRefPv + 182
>>>>>
>>>>> 6 HIToolbox 0x00007ff822908bd2
>>>>> _NotifyEventLoopObservers + 153
>>>>>
>>>>> 7 HIToolbox 0x00007ff8229403e6
>>>>> AcquireEventFromQueue + 494
>>>>>
>>>>> 8 HIToolbox 0x00007ff82292f3ec
>>>>> ReceiveNextEventCommon + 285
>>>>>
>>>>> 9 HIToolbox 0x00007ff82292f2b3
>>>>> _BlockUntilNextEventMatchingListInModeWithFilter + 70
>>>>>
>>>>> 10 AppKit 0x00007ff81c136f33 _DPSNextEvent + 909
>>>>>
>>>>> 11 AppKit 0x00007ff81c135db4
>>>>> -[NSApplication(NSEvent)
>>>>> _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219
>>>>>
>>>>> 12 grDevices.so 0x00000001086f7a77 input_handler + 215
>>>>>
>>>>> 13 libR.dylib 0x0000000108b142cf
>>>>> Rstd_ReadConsole + 2127
>>>>>
>>>>> 14 libR.dylib 0x0000000108a15b74
>>>>> Rf_ReplIteration + 100
>>>>>
>>>>> 15 libR.dylib 0x0000000108a174b1 R_ReplConsole + 161
>>>>>
>>>>> 16 libR.dylib 0x0000000108a17402 run_Rmainloop + 82
>>>>>
>>>>> 17 libR.dylib 0x0000000108a1753e Rf_mainloop + 14
>>>>>
>>>>> 18 R 0x000000010847af5b main + 27
>>>>>
>>>>> 19 dyld 0x00007ff818bde310 start + 2432
>>>>>
>>>>> I am using R through Terminal in my Mac
>>>>>
>>>>>> sessionInfo()
>>>>>
>>>>> R version 4.2.1 (2022-06-23)
>>>>>
>>>>> Platform: x86_64-apple-darwin17.0 (64-bit)
>>>>>
>>>>> Running under: macOS Big Sur ... 10.16
>>>>>
>>>>>
>>>>> Matrix products: default
>>>>>
>>>>> BLAS: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib
>>>>>
>>>>> LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
>>>>>
>>>>>
>>>>> locale:
>>>>>
>>>>> [1] C/UTF-8/C/C/C/C
>>>>>
>>>>>
>>>>> attached base packages:
>>>>>
>>>>> [1] stats graphics grDevices utils datasets methods base
>>>>>
>>>>>
>>>>> loaded via a namespace (and not attached):
>>>>>
>>>>> [1] compiler_4.2.1
>>>>>
>>>>> Is there any way to stop/hide these messages?
>>>>>
>>>>> Thanks for your time.
>>>>>
>>>>> _______________________________________________
>>>>> R-SIG-Mac mailing list
>>>>> R-SIG-Mac using r-project.org
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>>>>>
>>>>
>>
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> --
> Sent from my phone. Please excuse my brevity.
>
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--
Federico Calboli
Tutkija
Genomiikka ja jalostus, Luonnonvarakeskus
+358295322656
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