[R-SIG-Mac] List of unnecessary messages when I plot something in R from Terminal
Calboli Federico (LUKE)
|eder|co@c@|bo|| @end|ng |rom |uke@||
Sun Feb 12 12:43:33 CET 2023
Brian,
I can then report that on R 4.2.2 on aarch64-apple-darwin20 (64-bit), MacOS 13.2
plot(1:4)
returns a plot with no warnings nor other unexpected output, so Christofer’s problem is limited to the x86 achitecture.
> On 12. Feb 2023, at 13.33, Prof Brian Ripley <ripley using stats.ox.ac.uk> wrote:
>
> Please do read ?sessionInfo
>
> Where R was compiled under macOS 10.x (as the CRAN Intel
> distributions have been) but running under ‘Big Sur’ or later,
> macOS reports itself as ‘10.16’ (which R recognizes as ‘Big Sur
> ...’) and not ‘11.x’ or later.
>
> This is only an issue on Intel binary distributions: the arm64 ones are built on macOS 11.
>
> On 12/02/2023 09:48, Calboli Federico (LUKE) wrote:
>> Pretty use R does disinguish MacOS versions:
>>> sessionInfo()
>> R version 4.2.2 (2022-10-31)
>> Platform: aarch64-apple-darwin20 (64-bit)
>> Running under: macOS Ventura 13.2
>> for me. So if one is on Ventura but R thinks it is running on a different OS, that’s a starting point right there.
>> BW
>> F
>>> On 11. Feb 2023, at 23.53, Jeff Newmiller <jdnewmil using dcn.davis.ca.us> wrote:
>>>
>>> Operating systems are designed to be as backward-compatible as possible... R Core doesn't generally know what distinguishing features will identify a new OS until it is released, nor what it will be called, so R has a handicap.
>>>
>>> On February 11, 2023 1:12:42 PM PST, Christofer Bogaso <bogaso.christofer using gmail.com> wrote:
>>>> Actually when I check from the Apple icon, then I see that I am
>>>> actually running Ventura
>>>>
>>>> For some reason, R's sessionInfo() is reporting that I am running Big Sur.
>>>>
>>>> Not sure why R is reporting wrong. Thanks,
>
> 'macOS Big Sur ...' is not 'wrong'.
>
>>>> On Sun, Feb 12, 2023 at 2:38 AM Christofer Bogaso
>>>> <bogaso.christofer using gmail.com> wrote:
>>>>>
>>>>> Hi,
>>>>>
>>>>> I am running Big Sur. Below is my sessionInfo()
>>>>>
>>>>>> sessionInfo()
>>>>>
>>>>> R version 4.2.1 (2022-06-23)
>>>>>
>>>>> Platform: x86_64-apple-darwin17.0 (64-bit)
>>>>>
>>>>> Running under: macOS Big Sur ... 10.16
>>>>>
>>>>>
>>>>> Matrix products: default
>>>>>
>>>>> BLAS: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib
>>>>>
>>>>> LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
>>>>>
>>>>>
>>>>> locale:
>>>>>
>>>>> [1] C/UTF-8/C/C/C/C
>>>>>
>>>>>
>>>>> attached base packages:
>>>>>
>>>>> [1] stats graphics grDevices utils datasets methods base
>>>>>
>>>>>
>>>>> loaded via a namespace (and not attached):
>>>>>
>>>>> [1] compiler_4.2.1
>>>>>
>>>>> On Sun, Feb 12, 2023 at 1:55 AM Simon Urbanek
>>>>> <simon.urbanek using r-project.org> wrote:
>>>>>>
>>>>>> Christofer,
>>>>>>
>>>>>> yes, unfortunately this is a known bug in macOS Ventura affecting a lot of command-line programs that use GUI. Do not upgrade to Ventura (usually a good advice given the long list of known bugs in Ventura) or wait for a fix from Apple.
>>>>>>
>>>>>> Cheers,
>>>>>> Simon
>>>>>>
>>>>>>
>>>>>>
>>>>>>> On Feb 11, 2023, at 11:28 PM, Christofer Bogaso <bogaso.christofer using gmail.com> wrote:
>>>>>>>
>>>>>>> Hi,
>>>>>>>
>>>>>>> When I plot something in R, then it open Quartz and in the console I
>>>>>>> see below messages
>>>>>>>
>>>>>>>> plot(1:4)
>>>>>>>
>>>>>>>> 1 HIToolbox 0x00007ff8229a2726 _ZN15MenuBarInstance22EnsureAutoShowObserverEv + 102
>>>>>>>
>>>>>>> 2 HIToolbox 0x00007ff8229a22b8
>>>>>>> _ZN15MenuBarInstance14EnableAutoShowEv + 52
>>>>>>>
>>>>>>> 3 HIToolbox 0x00007ff822946908
>>>>>>> SetMenuBarObscured + 408
>>>>>>>
>>>>>>> 4 HIToolbox 0x00007ff8229464ca
>>>>>>> _ZN13HIApplication15HandleActivatedEP14OpaqueEventRefhP15OpaqueWindowPtrh
>>>>>>> + 164
>>>>>>>
>>>>>>> 5 HIToolbox 0x00007ff822940996
>>>>>>> _ZN13HIApplication13EventObserverEjP14OpaqueEventRefPv + 252
>>>>>>>
>>>>>>> 6 HIToolbox 0x00007ff822908bd2
>>>>>>> _NotifyEventLoopObservers + 153
>>>>>>>
>>>>>>> 7 HIToolbox 0x00007ff8229403e6
>>>>>>> AcquireEventFromQueue + 494
>>>>>>>
>>>>>>> 8 HIToolbox 0x00007ff82292f3ec
>>>>>>> ReceiveNextEventCommon + 285
>>>>>>>
>>>>>>> 9 HIToolbox 0x00007ff82292f2b3
>>>>>>> _BlockUntilNextEventMatchingListInModeWithFilter + 70
>>>>>>>
>>>>>>> 10 AppKit 0x00007ff81c136f33 _DPSNextEvent + 909
>>>>>>>
>>>>>>> 11 AppKit 0x00007ff81c135db4
>>>>>>> -[NSApplication(NSEvent)
>>>>>>> _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219
>>>>>>>
>>>>>>> 12 grDevices.so 0x00000001086f7a3b input_handler + 155
>>>>>>>
>>>>>>> 13 libR.dylib 0x0000000108b142cf
>>>>>>> Rstd_ReadConsole + 2127
>>>>>>>
>>>>>>> 14 libR.dylib 0x0000000108a15b74
>>>>>>> Rf_ReplIteration + 100
>>>>>>>
>>>>>>> 15 libR.dylib 0x0000000108a174b1 R_ReplConsole + 161
>>>>>>>
>>>>>>> 16 libR.dylib 0x0000000108a17402 run_Rmainloop + 82
>>>>>>>
>>>>>>> 17 libR.dylib 0x0000000108a1753e Rf_mainloop + 14
>>>>>>>
>>>>>>> 18 R 0x000000010847af5b main + 27
>>>>>>>
>>>>>>> 19 dyld 0x00007ff818bde310 start + 2432
>>>>>>>
>>>>>>> 1 HIToolbox 0x00007ff822aa952b
>>>>>>> _ZN15MenuBarInstance21IsAutoShowHideAllowedEv + 259
>>>>>>>
>>>>>>> 2 HIToolbox 0x00007ff8229a233e
>>>>>>> _ZN15MenuBarInstance24UpdateAutoShowVisibilityE5Pointh + 34
>>>>>>>
>>>>>>> 3 HIToolbox 0x00007ff8229117a4
>>>>>>> _ZN15MenuBarInstance16ForEachMenuBarDoEU13block_pointerFvPS_E + 46
>>>>>>>
>>>>>>> 4 HIToolbox 0x00007ff8229a293d
>>>>>>> _ZN15MenuBarInstance20AutoShowHideObserverEjP14OpaqueEventRefPv + 165
>>>>>>>
>>>>>>> 5 HIToolbox 0x00007ff822908bd2
>>>>>>> _NotifyEventLoopObservers + 153
>>>>>>>
>>>>>>> 6 HIToolbox 0x00007ff82293afb8
>>>>>>> PostEventToQueueInternal + 700
>>>>>>>
>>>>>>> 7 HIToolbox 0x00007ff82293c871
>>>>>>> _ZL29CreateAndPostEventWithCGEventP9__CGEventjhP17__CFMachPortBoost +
>>>>>>> 404
>>>>>>>
>>>>>>> 8 HIToolbox 0x00007ff822948ee9
>>>>>>> _ZL15Convert1CGEventh + 246
>>>>>>>
>>>>>>> 9 HIToolbox 0x00007ff822948d91
>>>>>>> _ZL16MainLoopObserverjP14OpaqueEventRefPv + 41
>>>>>>>
>>>>>>> 10 HIToolbox 0x00007ff822908bd2
>>>>>>> _NotifyEventLoopObservers + 153
>>>>>>>
>>>>>>> 11 HIToolbox 0x00007ff82292f726
>>>>>>> RunCurrentEventLoopInMode + 228
>>>>>>>
>>>>>>> 12 HIToolbox 0x00007ff82292f396
>>>>>>> ReceiveNextEventCommon + 199
>>>>>>>
>>>>>>> 13 HIToolbox 0x00007ff82292f2b3
>>>>>>> _BlockUntilNextEventMatchingListInModeWithFilter + 70
>>>>>>>
>>>>>>> 14 AppKit 0x00007ff81c136f33 _DPSNextEvent + 909
>>>>>>>
>>>>>>> 15 AppKit 0x00007ff81c135db4
>>>>>>> -[NSApplication(NSEvent)
>>>>>>> _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219
>>>>>>>
>>>>>>> 16 grDevices.so 0x00000001086f7a3b input_handler + 155
>>>>>>>
>>>>>>> 17 libR.dylib 0x0000000108b142cf
>>>>>>> Rstd_ReadConsole + 2127
>>>>>>>
>>>>>>> 18 libR.dylib 0x0000000108a15b74
>>>>>>> Rf_ReplIteration + 100
>>>>>>>
>>>>>>> 19 libR.dylib 0x0000000108a174b1 R_ReplConsole + 161
>>>>>>>
>>>>>>> 20 libR.dylib 0x0000000108a17402 run_Rmainloop + 82
>>>>>>>
>>>>>>> 21 libR.dylib 0x0000000108a1753e Rf_mainloop + 14
>>>>>>>
>>>>>>> 22 R 0x000000010847af5b main + 27
>>>>>>>
>>>>>>> 23 dyld 0x00007ff818bde310 start + 2432
>>>>>>>
>>>>>>> 1 HIToolbox 0x00007ff82292f0c2
>>>>>>> _ZN15MenuBarInstance22RemoveAutoShowObserverEv + 30
>>>>>>>
>>>>>>> 2 HIToolbox 0x00007ff8229467e3
>>>>>>> SetMenuBarObscured + 115
>>>>>>>
>>>>>>> 3 HIToolbox 0x00007ff82294d29e
>>>>>>> _ZN13HIApplication11FrontUILostEv + 34
>>>>>>>
>>>>>>> 4 HIToolbox 0x00007ff822946622
>>>>>>> _ZN13HIApplication15HandleActivatedEP14OpaqueEventRefhP15OpaqueWindowPtrh
>>>>>>> + 508
>>>>>>>
>>>>>>> 5 HIToolbox 0x00007ff822940950
>>>>>>> _ZN13HIApplication13EventObserverEjP14OpaqueEventRefPv + 182
>>>>>>>
>>>>>>> 6 HIToolbox 0x00007ff822908bd2
>>>>>>> _NotifyEventLoopObservers + 153
>>>>>>>
>>>>>>> 7 HIToolbox 0x00007ff8229403e6
>>>>>>> AcquireEventFromQueue + 494
>>>>>>>
>>>>>>> 8 HIToolbox 0x00007ff82292f3ec
>>>>>>> ReceiveNextEventCommon + 285
>>>>>>>
>>>>>>> 9 HIToolbox 0x00007ff82292f2b3
>>>>>>> _BlockUntilNextEventMatchingListInModeWithFilter + 70
>>>>>>>
>>>>>>> 10 AppKit 0x00007ff81c136f33 _DPSNextEvent + 909
>>>>>>>
>>>>>>> 11 AppKit 0x00007ff81c135db4
>>>>>>> -[NSApplication(NSEvent)
>>>>>>> _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219
>>>>>>>
>>>>>>> 12 grDevices.so 0x00000001086f7a77 input_handler + 215
>>>>>>>
>>>>>>> 13 libR.dylib 0x0000000108b142cf
>>>>>>> Rstd_ReadConsole + 2127
>>>>>>>
>>>>>>> 14 libR.dylib 0x0000000108a15b74
>>>>>>> Rf_ReplIteration + 100
>>>>>>>
>>>>>>> 15 libR.dylib 0x0000000108a174b1 R_ReplConsole + 161
>>>>>>>
>>>>>>> 16 libR.dylib 0x0000000108a17402 run_Rmainloop + 82
>>>>>>>
>>>>>>> 17 libR.dylib 0x0000000108a1753e Rf_mainloop + 14
>>>>>>>
>>>>>>> 18 R 0x000000010847af5b main + 27
>>>>>>>
>>>>>>> 19 dyld 0x00007ff818bde310 start + 2432
>>>>>>>
>>>>>>> I am using R through Terminal in my Mac
>>>>>>>
>>>>>>>> sessionInfo()
>>>>>>>
>>>>>>> R version 4.2.1 (2022-06-23)
>>>>>>>
>>>>>>> Platform: x86_64-apple-darwin17.0 (64-bit)
>>>>>>>
>>>>>>> Running under: macOS Big Sur ... 10.16
>>>>>>>
>>>>>>>
>>>>>>> Matrix products: default
>>>>>>>
>>>>>>> BLAS: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib
>>>>>>>
>>>>>>> LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
>>>>>>>
>>>>>>>
>>>>>>> locale:
>>>>>>>
>>>>>>> [1] C/UTF-8/C/C/C/C
>>>>>>>
>>>>>>>
>>>>>>> attached base packages:
>>>>>>>
>>>>>>> [1] stats graphics grDevices utils datasets methods base
>>>>>>>
>>>>>>>
>>>>>>> loaded via a namespace (and not attached):
>>>>>>>
>>>>>>> [1] compiler_4.2.1
>>>>>>>
>>>>>>> Is there any way to stop/hide these messages?
>>>>>>>
>>>>>>> Thanks for your time.
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> R-SIG-Mac mailing list
>>>>>>> R-SIG-Mac using r-project.org
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>>>>>>>
>>>>>>
>>>>
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>>>
>>> --
>>> Sent from my phone. Please excuse my brevity.
>>>
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>> --
>> Federico Calboli
>> Tutkija
>> Genomiikka ja jalostus, Luonnonvarakeskus
>> +358295322656
>> _______________________________________________
>> R-SIG-Mac mailing list
>> R-SIG-Mac using r-project.org
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>
> --
> Brian D. Ripley, ripley using stats.ox.ac.uk
> Emeritus Professor of Applied Statistics, University of Oxford
>
--
Federico Calboli
Tutkija
Genomiikka ja jalostus, Luonnonvarakeskus
+358295322656
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