[R-SIG-Mac] rlang and the new R version 4.1.0

Tue May 25 22:31:48 CEST 2021

Okay was able to find the link - https://www.r-bloggers.com/2020/04/updating-to-4-0-0-on-macos/

Also would suggest installing RSwitch  (https://rud.is/rswitch/) so you can keep both versions and switch between the until you ar certain all the kinks are gone.

-Roy

> On May 25, 2021, at 1:28 PM, Roy Mendelssohn - NOAA Federal <roy.mendelssohn using noaa.gov> wrote:
> 
> When R4.0 came out,  someone on R-Bloggers post a very nice to automate updating your packages from R3.6.  I just used it to do my update from R4.0 to R4.1 - it works perfectly.  I would include the script here,  but since I don't have the exact reference I don't like posting someone else's script without appropriate credit.  Do a search and you should be able to find the entry.
> 
> -Roy
> 
>> On May 25, 2021, at 1:10 PM, Simon Urbanek <simon.urbanek using R-project.org> wrote:
>> 
>> 
>> Hans,
>> 
>> you seem to be using old library from 4.0 (see the 4.0 in the path). Make sure you remove old packages and use a clean library for 4.1 since you cannot mix packages from R 4.0.x and R 4.1.0. I would best recommend removing (or re-naming) ~/Library/R before installation to make sure you don't have incompatible old packages. Also don't forget to re-start R.
>> 
>> (Marc, I can't parse your post, it makes no sense to me, there no R-devel involved in any of this, so please post separately about whatever is on your heart as that doesn't seem to be related).
>> 
>> Cheers,
>> Simon
>> 
>> 
>> 
>>> On May 26, 2021, at 2:06 AM, Marc Schwartz <marc_schwartz using me.com> wrote:
>>> 
>>> Hi,
>>> 
>>> You might try a different CRAN mirror to see if perhaps the rlang binary that you are getting is corrupted.
>>> 
>>> Looking at CRAN for the package, the results for rlang on what is supposed to be R release on macOS:
>>> 
>>> https://cran.r-project.org/web/checks/check_results_rlang.html
>>> 
>>> shows a header indicating that R devel is being used, not R release:
>>> 
>>> https://www.r-project.org/nosvn/R.check/r-release-macos-x86_64/rlang-00check.html
>>> 
>>> So, I am not clear if there is a macOS binary build issue that may be resulting in a conflict of sorts.
>>> 
>>> A spot check of other CRAN packages (including my own) shows the same use of R devel for macOS, and not R release, so perhaps there is a wider issue going on with CRAN builds, unless I am missing something here.
>>> 
>>> Simon (cc'd now) may be able to address that issue.
>>> 
>>> Regards,
>>> 
>>> Marc Schwartz
>>> 
>>> 
>>> Hans W wrote on 5/25/21 9:16 AM:
>>>> I installed the new R version 4.1.0 on my (normal) Macbook, and
>>>> everything seemed to work fine until one of the packages depended on
>>>> the 'rlang' package and I got the following error:
>>>>> library(rlang)
>>>>   Error: package or namespace load failed for ‘rlang’ in
>>>>   dyn.load(file, DLLpath = DLLpath, ...): unable to load
>>>>   shared object '/Users/hwb/Library/R/4.0/library/rlang/libs/rlang.so':
>>>>   dlopen(/Users/hwb/Library/R/4.0/library/rlang/libs/rlang.so, 6):
>>>>   Library not loaded:
>>>>   /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libR.dylib
>>>>   Referenced from: /Users/hwb/Library/R/4.0/library/rlang/libs/rlang.so
>>>>   Reason: image not found
>>>> So I removed 'rlang' and reinstalled it. There was no error message,
>>>> but when I tried to load it, the error message was:
>>>>   Error: package or namespace load failed for ‘rlang’ in
>>>>   get(Info[i, 1], envir = env): lazy-load database
>>>>   '/Users/hwb/Library/R/4.0/library/rlang/R/rlang.rdb' is corrupt
>>>>   In addition: Warning message:
>>>>   In get(Info[i, 1], envir = env) : internal error -3 in R_decompress1
>>>> One of my current applications relies on 'rvest' which depends on
>>>> 'rlang'. For the moment I am using it from a Linux computer, but it's
>>>> quite unfortunate that I cannot run it from macOS as well.
>>>> I also uninstalled the new R version and reinstalled it, but nothing
>>>> changed. Could you give me a hint on what to do (or what I did wrong)?
>>>> _______________________________________________
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>>>> R-SIG-Mac using r-project.org
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>>> 
>> 
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> 
> **********************
> "The contents of this message do not reflect any position of the U.S. Government or NOAA."
> **********************
> Roy Mendelssohn
> Supervisory Operations Research Analyst
> NOAA/NMFS
> Environmental Research Division
> Southwest Fisheries Science Center
> ***Note new street address***
> 110 McAllister Way
> Santa Cruz, CA 95060
> Phone: (831)-420-3666
> Fax: (831) 420-3980
> e-mail: Roy.Mendelssohn using noaa.gov www: https://www.pfeg.noaa.gov/
> 
> "Old age and treachery will overcome youth and skill."
> "From those who have been given much, much will be expected" 
> "the arc of the moral universe is long, but it bends toward justice" -MLK Jr.
> 

**********************
"The contents of this message do not reflect any position of the U.S. Government or NOAA."
**********************
Roy Mendelssohn
Supervisory Operations Research Analyst
NOAA/NMFS
Environmental Research Division
Southwest Fisheries Science Center
***Note new street address***
110 McAllister Way
Santa Cruz, CA 95060
Phone: (831)-420-3666
Fax: (831) 420-3980
e-mail: Roy.Mendelssohn using noaa.gov www: https://www.pfeg.noaa.gov/

"Old age and treachery will overcome youth and skill."
"From those who have been given much, much will be expected" 
"the arc of the moral universe is long, but it bends toward justice" -MLK Jr.