[R-SIG-Mac] Can't open files in 4.0 or 4.01
Carl Witthoft
c@r| @end|ng |rom w|ttho|t@com
Mon Jun 8 00:15:26 CEST 2020
I'm not sure what to look for in the Reports sections of Console.app,
but I did find this report of R exceeding a diagnostic limit of CPU
usage, which most likely is related to one of the hangs - R.app always
goes full throttle on one CPU core.
Date/Time: 2020-06-05 18:58:36 -0400
End time: 2020-06-05 19:00:16 -0400
OS Version: Mac OS X 10.15.5 (Build 19F101)
Architecture: x86_64h
Report Version: 29
Incident Identifier: E3BE34D3-09C5-4AA9-A89D-A9E5F8F0EB6B
Data Source: Microstackshots
Shared Cache: 0x3868000 57B2E2F3-10A7-3AAD-AC94-975B957DF535
Command: R
Path: /Applications/R.app/Contents/MacOS/R
Identifier: org.R-project.R
Version: R 4.0.0 GUI 1.71 Catalina build (7827)
PID: 21391
Event: cpu usage
Action taken: none
CPU: 90 seconds cpu time over 100 seconds (90% cpu
average), exceeding limit of 50% cpu over 180 seconds
CPU limit: 90s
Limit duration: 180s
CPU used: 90s
CPU duration: 100s
Duration: 100.35s
Duration Sampled: 87.74s
Steps: 51
Hardware model: iMac19,2
Active cpus: 4
Fan speed: 1200 rpm
Heaviest stack for the target process:
51 start + 1 (libdyld.dylib + 109769) [0x7fff6a9b1cc9]
51 main + 720 (R + 8032) [0x105c66f60]
51 -[NSApplication finishLaunching] + 2601 (AppKit + 207160)
[0x7fff2dc1c938]
51 -[NSApplication _postDidFinishNotification] + 312 (AppKit +
306403) [0x7fff2dc34ce3]
51 -[NSNotificationCenter postNotificationName:object:userInfo:] +
59 (Foundation + 38790) [0x7fff32ff6786]
51 _CFXNotificationPost + 1351 (CoreFoundation + 297529)
[0x7fff3097ba39]
51 -[_CFXNotificationRegistrar find:object:observer:enumerator:] +
1554 (CoreFoundation + 300429) [0x7fff3097c58d]
51 ___CFXNotificationPost_block_invoke + 80 (CoreFoundation +
496660) [0x7fff309ac414]
51 _CFXRegistrationPost1 + 372 (CoreFoundation + 497576)
[0x7fff309ac7a8]
51 ___CFXRegistrationPost1_block_invoke + 63 (CoreFoundation +
497715) [0x7fff309ac833]
51 __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 12
(CoreFoundation + 497823) [0x7fff309ac89f]
51 -[RController applicationDidFinishLaunching:] + 1176 (R + 15960)
[0x105c68e58]
51 -[REngine executeString:] + 286 (R + 76926) [0x105c77c7e]
51 -[NSRunLoop(NSRunLoop) runMode:beforeDate:] + 212 (Foundation +
393672) [0x7fff3304d1c8]
51 CFRunLoopRunSpecific + 462 (CoreFoundation + 532174) [0x7fff309b4ece]
51 __CFRunLoopRun + 874 (CoreFoundation + 534677) [0x7fff309b5895]
51 __CFRunLoopDoObservers + 457 (CoreFoundation + 537335)
[0x7fff309b62f7]
51 __CFRUNLOOP_IS_CALLING_OUT_TO_AN_OBSERVER_CALLBACK_FUNCTION__ +
23 (CoreFoundation + 537541) [0x7fff309b63c5]
51 ___NSRunLoopObserverCreateWithHandler_block_invoke + 41 (AppKit +
9439312) [0x7fff2e4ea850]
51 __62+[CATransaction(NSCATransaction)
NS_setFlushesWithDisplayLink]_block_invoke + 266 (AppKit + 1971601)
[0x7fff2ddcb591]
51 CA::Transaction::commit() + 644 (QuartzCore + 8352) [0x7fff3c47a0a0]
51 CA::Context::commit_transaction(CA::Transaction*, double) + 334
(QuartzCore + 13494) [0x7fff3c47b4b6]
51 CA::Layer::display_if_needed(CA::Transaction*) + 757 (QuartzCore
+ 152061) [0x7fff3c49d1fd]
51 -[_NSViewBackingLayer display] + 800 (AppKit + 1231223)
[0x7fff2dd16977]
51 -[_NSBackingLayer display] + 537 (AppKit + 1879690) [0x7fff2ddb4e8a]
51 -[CALayer _display] + 2103 (QuartzCore + 156002) [0x7fff3c49e162]
51 invocation function for block in CA::Layer::display_() + 53
(QuartzCore + 550873) [0x7fff3c4fe7d9]
51 CABackingStoreUpdate_ + 595 (QuartzCore + 158813) [0x7fff3c49ec5d]
51 -[NSView(NSLayerKitGlue)
_drawViewBackingLayer:inContext:drawingHandler:] + 1271 (AppKit +
1881242) [0x7fff2ddb549a]
51 -[NSView(NSInternal)
_recursive:displayRectIgnoringOpacity:inContext:stopAtLayerBackedViews:]
+ 2170 (AppKit + 1884318) [0x7fff2ddb609e]
51 _NSViewDrawRect + 139 (AppKit + 1887631) [0x7fff2ddb6d8f]
51 -[_NSRulerContentView drawRect:] + 157 (AppKit + 7667047)
[0x7fff2e339d67]
51 -[NSRulerView _drawContentRect:] + 233 (AppKit + 7663663)
[0x7fff2e33902f]
51 -[NoodleLineNumberView drawHashMarksAndLabelsInRect:] + 345 (R +
338153) [0x105cb78e9]
51 -[NSLayoutManager(NSPrivate)
_glyphRangeForBoundingRect:inTextContainer:fast:okToFillHoles:] + 857
(UIFoundation + 336155) [0x7fff61a0411b]
51 -[NSLayoutManager(NSPrivate)
_firstPassGlyphRangeForBoundingRect:inTextContainer:okToFillHoles:] +
1441 (UIFoundation + 341594) [0x7fff61a0565a]
51 _NSFastFillAllLayoutHolesForGlyphRange + 1863 (UIFoundation +
202864) [0x7fff619e3870]
51 _resizeTextViewsIfNeeded + 284 (UIFoundation + 427013)
[0x7fff61a1a405]
51 -[NSLayoutManager(NSPrivate) _resizeTextViewForTextContainer:] +
1103 (UIFoundation + 144184) [0x7fff619d5338]
51 -[NSTextView setConstrainedFrameSize:] + 591 (AppKit + 1539771)
[0x7fff2dd61ebb]
51 -[NSTextView setFrameSize:] + 145 (AppKit + 2123877) [0x7fff2ddf0865]
51 -[NSTextView(NSPrivate) _setFrameSize:forceScroll:] + 962 (AppKit
+ 2125105) [0x7fff2ddf0d31]
51 -[NSView setFrameSize:] + 1800 (AppKit + 501964) [0x7fff2dc648cc]
51 -[NSView(NSInternal) _updateLayerGeometryFromView] + 776 (AppKit
+ 402692) [0x7fff2dc4c504]
51 -[NSView setNeedsDisplay:] + 52 (AppKit + 395124) [0x7fff2dc4a774]
51 -[NSTextView setNeedsDisplayInRect:avoidAdditionalLayout:] + 1040
(AppKit + 1536469) [0x7fff2dd611d5]
51 -[NSLayoutManager(NSPrivate)
_glyphRangeForBoundingRect:inTextContainer:fast:okToFillHoles:] + 857
(UIFoundation + 336155) [0x7fff61a0411b]
51 -[NSLayoutManager(NSPrivate)
_firstPassGlyphRangeForBoundingRect:inTextContainer:okToFillHoles:] +
1441 (UIFoundation + 341594) [0x7fff61a0565a]
51 _NSFastFillAllLayoutHolesForGlyphRange + 1596 (UIFoundation +
202597) [0x7fff619e3765]
51 -[NSLayoutManager(NSPrivate)
_fillLayoutHoleForCharacterRange:desiredNumberOfLines:isSoft:] + 1106
(UIFoundation + 390033) [0x7fff61a11391]
51 -[NSATSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
+ 815 (UIFoundation + 396679) [0x7fff61a12d87]
51 -[NSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
+ 241 (UIFoundation + 397071) [0x7fff61a12f0f]
51 -[NSTypesetter
_layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:]
+ 3120 (UIFoundation + 94425) [0x7fff619c90d9]
51 -[NSATSTypesetter layoutParagraphAtPoint:] + 181 (UIFoundation +
399167) [0x7fff61a1373f]
51 -[NSATSTypesetter
_layoutLineFragmentStartingWithGlyphAtIndex:characterIndex:atPoint:renderingContext:]
+ 6960 (UIFoundation + 285726) [0x7fff619f7c1e]
51 -[NSLayoutManager(NSPrivate)
setLineFragmentRect:forGlyphRange:usedRect:baselineOffset:] + 85
(UIFoundation + 413988) [0x7fff61a17124]
51 -[NSLayoutManager setLineFragmentRect:forGlyphRange:usedRect:] +
328 (UIFoundation + 414361) [0x7fff61a17299]
51 -[NSLayoutManager(NSPrivate)
_updateUsageForTextContainer:addingUsedRect:] + 529 (UIFoundation +
123653) [0x7fff619d0305]
51 -[NSLayoutManager(NSPrivate) _resizeTextViewForTextContainer:] +
1103 (UIFoundation + 144184) [0x7fff619d5338]
51 -[NSTextView setConstrainedFrameSize:] + 591 (AppKit + 1539771)
[0x7fff2dd61ebb]
51 -[NSTextView setFrameSize:] + 145 (AppKit + 2123877) [0x7fff2ddf0865]
51 -[NSTextView(NSPrivate) _setFrameSize:forceScroll:] + 962 (AppKit
+ 2125105) [0x7fff2ddf0d31]
51 -[NSView setFrameSize:] + 3248 (AppKit + 503412) [0x7fff2dc64e74]
51 -[NSView _postFrameChangeNotification] + 82 (AppKit + 532785)
[0x7fff2dc6c131]
51 -[NSClipView _reflectDocumentViewFrameChange] + 634 (AppKit +
812362) [0x7fff2dcb054a]
51 __45-[NSClipView _reflectDocumentViewFrameChange]_block_invoke +
95 (AppKit + 812882) [0x7fff2dcb0752]
51 -[NSScrollView reflectScrolledClipView:] + 774 (AppKit + 876231)
[0x7fff2dcbfec7]
51 -[NSScrollView _tileWithoutRecursing] + 35 (AppKit + 939709)
[0x7fff2dccf6bd]
51 -[NSScrollView tile] + 680 (AppKit + 940418) [0x7fff2dccf982]
51 -[NSScrollView _setContentViewFrame:] + 328 (AppKit + 953695)
[0x7fff2dcd2d5f]
51 -[NSView setFrame:] + 423 (AppKit + 575534) [0x7fff2dc7682e]
51 -[NSClipView setFrameSize:] + 425 (AppKit + 810307) [0x7fff2dcafd43]
51 -[NSView setFrameSize:] + 2045 (AppKit + 502209) [0x7fff2dc649c1]
51 -[NSView resizeSubviewsWithOldSize:] + 525 (AppKit + 652445)
[0x7fff2dc8949d]
51 -[NSView resizeWithOldSuperviewSize:] + 1178 (AppKit + 654713)
[0x7fff2dc89d79]
51 -[NSView setFrame:] + 423 (AppKit + 575534) [0x7fff2dc7682e]
51 -[NSTextView setFrameSize:] + 145 (AppKit + 2123877) [0x7fff2ddf0865]
51 -[NSTextView(NSPrivate) _setFrameSize:forceScroll:] + 1130
(AppKit + 2125273) [0x7fff2ddf0dd9]
51 -[NSLayoutManager boundingRectForGlyphRange:inTextContainer:] +
47 (UIFoundation + 451356) [0x7fff61a2031c]
51 -[NSLayoutManager(NSPrivate)
_boundingRectForGlyphRange:inTextContainer:fast:fullLineRectsOnly:] +
108 (UIFoundation + 432612) [0x7fff61a1b9e4]
51 -[NSLayoutManager(NSPrivate)
_rectArrayForRange:withinSelectionRange:rangeIsCharRange:singleRectOnly:fullLineRectsOnly:inTextContainer:rectCount:rangeWithinContainer:glyphsDrawOutsideLines:]
+ 58 (UIFoundation + 1820289) [0x7fff61b6e681]
51 -[NSLayoutManager(NSPrivate)
_rectArrayForRange:withinSelectionRange:rangeIsCharRange:singleRectOnly:fullLineRectsOnly:inTextContainer:rectCount:rangeWithinContainer:glyphsDrawOutsideLines:rectArray:rectArrayCapacity:]
+ 748 (UIFoundation + 192486) [0x7fff619e0fe6]
51 _NSFastFillAllLayoutHolesForGlyphRange + 1596 (UIFoundation +
202597) [0x7fff619e3765]
51 -[NSLayoutManager(NSPrivate)
_fillLayoutHoleForCharacterRange:desiredNumberOfLines:isSoft:] + 1106
(UIFoundation + 390033) [0x7fff61a11391]
51 -[NSATSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
+ 283 (UIFoundation + 396147) [0x7fff61a12b73]
51 -[NSATSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
+ 815 (UIFoundation + 396679) [0x7fff61a12d87]
51 -[NSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
+ 241 (UIFoundation + 397071) [0x7fff61a12f0f]
51 -[NSTypesetter
_layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:]
+ 2950 (UIFoundation + 94255) [0x7fff619c902f]
51 -[NSTypesetter
_getRemainingNominalParagraphRange:andParagraphSeparatorRange:charactarIndex:layoutManager:string:]
+ 1233 (UIFoundation + 398399) [0x7fff61a1343f]
51 ??? [0]
51 _sigtramp + 29 (libsystem_platform.dylib + 13821) [0x7fff6abaa5fd]
51 sigactionSegv + 675 (main.c:623,9 in libR.dylib + 1115667)
[0x105e89613]
51 Re_ReadConsole + 184 (R + 64824) [0x105c74d38]
51 -[RController handleReadConsole:] + 158 (R + 27070) [0x105c6b9be]
51 -[RController doProcessEvents:] + 190 (R + 50030) [0x105c7136e]
51 -[NSApplication(NSEvent)
_nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352 (AppKit +
262256) [0x7fff2dc2a070]
51 _DPSNextEvent + 883 (AppKit + 268329) [0x7fff2dc2b829]
51 _BlockUntilNextEventMatchingListInModeWithFilter + 64 (HIToolbox
+ 193913) [0x7fff2f5e3579]
51 ReceiveNextEventCommon + 584 (HIToolbox + 194517) [0x7fff2f5e37d5]
51 RunCurrentEventLoopInMode + 292 (HIToolbox + 195261) [0x7fff2f5e3abd]
51 CFRunLoopRunSpecific + 462 (CoreFoundation + 532174) [0x7fff309b4ece]
51 __CFRunLoopRun + 1871 (CoreFoundation + 535674) [0x7fff309b5c7a]
51 __CFRunLoopDoTimers + 322 (CoreFoundation + 646871) [0x7fff309d0ed7]
51 __CFRunLoopDoTimer + 859 (CoreFoundation + 648175) [0x7fff309d13ef]
51 __CFRUNLOOP_IS_CALLING_OUT_TO_A_TIMER_CALLBACK_FUNCTION__ + 20
(CoreFoundation + 649353) [0x7fff309d1889]
51 __NSFireDelayedPerform + 415 (Foundation + 636642) [0x7fff330886e2]
51 _NSFastFillAllLayoutHolesForGlyphRange + 1596 (UIFoundation +
202597) [0x7fff619e3765]
51 -[NSLayoutManager(NSPrivate)
_fillLayoutHoleForCharacterRange:desiredNumberOfLines:isSoft:] + 1106
(UIFoundation + 390033) [0x7fff61a11391]
51 -[NSATSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
+ 283 (UIFoundation + 396147) [0x7fff61a12b73]
51 -[NSATSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
+ 815 (UIFoundation + 396679) [0x7fff61a12d87]
51 -[NSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
+ 241 (UIFoundation + 397071) [0x7fff61a12f0f]
51 -[NSTypesetter
_layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:]
+ 2950 (UIFoundation + 94255) [0x7fff619c902f]
51 -[NSTypesetter
_getRemainingNominalParagraphRange:andParagraphSeparatorRange:charactarIndex:layoutManager:string:]
+ 1233 (UIFoundation + 398399) [0x7fff61a1343f]
51 ??? [0]
Powerstats for: R [21391]
UUID: 1C907587-5382-3CF9-B969-656D72C6C435
Path: /Applications/R.app/Contents/MacOS/R
Architecture: x86_64
Footprint: 117.00 MB -> 95.42 MB (-21.57 MB)
Start time: 2020-06-05 18:58:48 -0400
End time: 2020-06-05 19:00:16 -0400
Num samples: 51 (100%)
CPU Time: 87.750s
Primary state: 26 samples Non-Frontmost App, Non-Suppressed, Kernel
mode, Effective Thread QoS User Interactive, Requested Thread QoS User
Interactive, Override Thread QoS Unspecified
User Activity: 0 samples Idle, 51 samples Active
Power Source: 0 samples on Battery, 51 samples on AC
51 start + 1 (libdyld.dylib + 109769) [0x7fff6a9b1cc9]
51 main + 720 (R + 8032) [0x105c66f60]
51 -[NSApplication finishLaunching] + 2601 (AppKit + 207160)
[0x7fff2dc1c938]
51 -[NSApplication _postDidFinishNotification] + 312 (AppKit +
306403) [0x7fff2dc34ce3]
51 -[NSNotificationCenter
postNotificationName:object:userInfo:] + 59 (Foundation + 38790)
[0x7fff32ff6786]
51 _CFXNotificationPost + 1351 (CoreFoundation + 297529)
[0x7fff3097ba39]
51 -[_CFXNotificationRegistrar
find:object:observer:enumerator:] + 1554 (CoreFoundation + 300429)
[0x7fff3097c58d]
51 ___CFXNotificationPost_block_invoke + 80
(CoreFoundation + 496660) [0x7fff309ac414]
51 _CFXRegistrationPost1 + 372 (CoreFoundation +
497576) [0x7fff309ac7a8]
51 ___CFXRegistrationPost1_block_invoke + 63
(CoreFoundation + 497715) [0x7fff309ac833]
51
__CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 12
(CoreFoundation + 497823) [0x7fff309ac89f]
51 -[RController
applicationDidFinishLaunching:] + 1176 (R + 15960) [0x105c68e58]
51 -[REngine executeString:] + 286 (R +
76926) [0x105c77c7e]
51 -[NSRunLoop(NSRunLoop)
runMode:beforeDate:] + 212 (Foundation + 393672) [0x7fff3304d1c8]
51 CFRunLoopRunSpecific + 462
(CoreFoundation + 532174) [0x7fff309b4ece]
51 __CFRunLoopRun + 874
(CoreFoundation + 534677) [0x7fff309b5895]
51 __CFRunLoopDoObservers + 457
(CoreFoundation + 537335) [0x7fff309b62f7]
51
__CFRUNLOOP_IS_CALLING_OUT_TO_AN_OBSERVER_CALLBACK_FUNCTION__ + 23
(CoreFoundation + 537541) [0x7fff309b63c5]
51
___NSRunLoopObserverCreateWithHandler_block_invoke + 41 (AppKit +
9439312) [0x7fff2e4ea850]
51
__62+[CATransaction(NSCATransaction)
NS_setFlushesWithDisplayLink]_block_invoke + 266 (AppKit + 1971601)
[0x7fff2ddcb591]
51 CA::Transaction::commit()
+ 644 (QuartzCore + 8352) [0x7fff3c47a0a0]
51
CA::Context::commit_transaction(CA::Transaction*, double) + 334
(QuartzCore + 13494) [0x7fff3c47b4b6]
51
CA::Layer::display_if_needed(CA::Transaction*) + 757 (QuartzCore +
152061) [0x7fff3c49d1fd]
51
-[_NSViewBackingLayer display] + 800 (AppKit + 1231223) [0x7fff2dd16977]
51 -[_NSBackingLayer
display] + 537 (AppKit + 1879690) [0x7fff2ddb4e8a]
51 -[CALayer
_display] + 2103 (QuartzCore + 156002) [0x7fff3c49e162]
51 invocation
function for block in CA::Layer::display_() + 53 (QuartzCore + 550873)
[0x7fff3c4fe7d9]
51
CABackingStoreUpdate_ + 595 (QuartzCore + 158813) [0x7fff3c49ec5d]
51
-[NSView(NSLayerKitGlue)
_drawViewBackingLayer:inContext:drawingHandler:] + 1271 (AppKit +
1881242) [0x7fff2ddb549a]
51
-[NSView(NSInternal)
_recursive:displayRectIgnoringOpacity:inContext:stopAtLayerBackedViews:]
+ 2170 (AppKit + 1884318) [0x7fff2ddb609e]
51
_NSViewDrawRect + 139 (AppKit + 1887631) [0x7fff2ddb6d8f]
51
-[_NSRulerContentView drawRect:] + 157 (AppKit + 7667047) [0x7fff2e339d67]
51
-[NSRulerView _drawContentRect:] + 233 (AppKit + 7663663) [0x7fff2e33902f]
51
-[NoodleLineNumberView drawHashMarksAndLabelsInRect:] + 345 (R + 338153)
[0x105cb78e9]
51 -[NSLayoutManager(NSPrivate)
_glyphRangeForBoundingRect:inTextContainer:fast:okToFillHoles:] + 857
(UIFoundation + 336155) [0x7fff61a0411b]
51 -[NSLayoutManager(NSPrivate)
_firstPassGlyphRangeForBoundingRect:inTextContainer:okToFillHoles:] +
1441 (UIFoundation + 341594) [0x7fff61a0565a]
51 _NSFastFillAllLayoutHolesForGlyphRange + 1863 (UIFoundation +
202864) [0x7fff619e3870]
51 _resizeTextViewsIfNeeded + 284 (UIFoundation + 427013)
[0x7fff61a1a405]
51 -[NSLayoutManager(NSPrivate)
_resizeTextViewForTextContainer:] + 1103 (UIFoundation + 144184)
[0x7fff619d5338]
51 -[NSTextView setConstrainedFrameSize:] + 591 (AppKit +
1539771) [0x7fff2dd61ebb]
51 -[NSTextView setFrameSize:] + 145 (AppKit + 2123877)
[0x7fff2ddf0865]
51 -[NSTextView(NSPrivate) _setFrameSize:forceScroll:] +
962 (AppKit + 2125105) [0x7fff2ddf0d31]
51 -[NSView setFrameSize:] + 1800 (AppKit + 501964)
[0x7fff2dc648cc]
51 -[NSView(NSInternal) _updateLayerGeometryFromView]
+ 776 (AppKit + 402692) [0x7fff2dc4c504]
51 -[NSView setNeedsDisplay:] + 52 (AppKit + 395124)
[0x7fff2dc4a774]
51 -[NSTextView
setNeedsDisplayInRect:avoidAdditionalLayout:] + 1040 (AppKit + 1536469)
[0x7fff2dd611d5]
51 -[NSLayoutManager(NSPrivate)
_glyphRangeForBoundingRect:inTextContainer:fast:okToFillHoles:] + 857
(UIFoundation + 336155) [0x7fff61a0411b]
51 -[NSLayoutManager(NSPrivate)
_firstPassGlyphRangeForBoundingRect:inTextContainer:okToFillHoles:] +
1441 (UIFoundation + 341594) [0x7fff61a0565a]
51 _NSFastFillAllLayoutHolesForGlyphRange +
1596 (UIFoundation + 202597) [0x7fff619e3765]
51 -[NSLayoutManager(NSPrivate)
_fillLayoutHoleForCharacterRange:desiredNumberOfLines:isSoft:] + 1106
(UIFoundation + 390033) [0x7fff61a11391]
51 -[NSATSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
+ 815 (UIFoundation + 396679) [0x7fff61a12d87]
51 -[NSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
+ 241 (UIFoundation + 397071) [0x7fff61a12f0f]
51 -[NSTypesetter
_layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:]
+ 3120 (UIFoundation + 94425) [0x7fff619c90d9]
51 -[NSATSTypesetter
layoutParagraphAtPoint:] + 181 (UIFoundation + 399167) [0x7fff61a1373f]
51 -[NSATSTypesetter
_layoutLineFragmentStartingWithGlyphAtIndex:characterIndex:atPoint:renderingContext:]
+ 6960 (UIFoundation + 285726) [0x7fff619f7c1e]
51
-[NSLayoutManager(NSPrivate)
setLineFragmentRect:forGlyphRange:usedRect:baselineOffset:] + 85
(UIFoundation + 413988) [0x7fff61a17124]
51 -[NSLayoutManager
setLineFragmentRect:forGlyphRange:usedRect:] + 328 (UIFoundation +
414361) [0x7fff61a17299]
51
-[NSLayoutManager(NSPrivate)
_updateUsageForTextContainer:addingUsedRect:] + 529 (UIFoundation +
123653) [0x7fff619d0305]
51
-[NSLayoutManager(NSPrivate) _resizeTextViewForTextContainer:] + 1103
(UIFoundation + 144184) [0x7fff619d5338]
51 -[NSTextView
setConstrainedFrameSize:] + 591 (AppKit + 1539771) [0x7fff2dd61ebb]
51 -[NSTextView
setFrameSize:] + 145 (AppKit + 2123877) [0x7fff2ddf0865]
51
-[NSTextView(NSPrivate) _setFrameSize:forceScroll:] + 962 (AppKit +
2125105) [0x7fff2ddf0d31]
51 -[NSView
setFrameSize:] + 3248 (AppKit + 503412) [0x7fff2dc64e74]
51 -[NSView
_postFrameChangeNotification] + 82 (AppKit + 532785) [0x7fff2dc6c131]
51
-[NSClipView _reflectDocumentViewFrameChange] + 634 (AppKit + 812362)
[0x7fff2dcb054a]
51
__45-[NSClipView _reflectDocumentViewFrameChange]_block_invoke + 95
(AppKit + 812882) [0x7fff2dcb0752]
51
-[NSScrollView reflectScrolledClipView:] + 774 (AppKit + 876231)
[0x7fff2dcbfec7]
51
-[NSScrollView _tileWithoutRecursing] + 35 (AppKit + 939709)
[0x7fff2dccf6bd]
51
-[NSScrollView tile] + 680 (AppKit + 940418) [0x7fff2dccf982]
51
-[NSScrollView _setContentViewFrame:] + 328 (AppKit + 953695)
[0x7fff2dcd2d5f]
51 -[NSView setFrame:] + 423 (AppKit + 575534) [0x7fff2dc7682e]
51 -[NSClipView setFrameSize:] + 425 (AppKit + 810307) [0x7fff2dcafd43]
51 -[NSView setFrameSize:] + 2045 (AppKit + 502209) [0x7fff2dc649c1]
51 -[NSView resizeSubviewsWithOldSize:] + 525 (AppKit + 652445)
[0x7fff2dc8949d]
51 -[NSView resizeWithOldSuperviewSize:] + 1178 (AppKit +
654713) [0x7fff2dc89d79]
51 -[NSView setFrame:] + 423 (AppKit + 575534) [0x7fff2dc7682e]
51 -[NSTextView setFrameSize:] + 145 (AppKit + 2123877)
[0x7fff2ddf0865]
51 -[NSTextView(NSPrivate) _setFrameSize:forceScroll:] +
1130 (AppKit + 2125273) [0x7fff2ddf0dd9]
51 -[NSLayoutManager
boundingRectForGlyphRange:inTextContainer:] + 47 (UIFoundation + 451356)
[0x7fff61a2031c]
51 -[NSLayoutManager(NSPrivate)
_boundingRectForGlyphRange:inTextContainer:fast:fullLineRectsOnly:] +
108 (UIFoundation + 432612) [0x7fff61a1b9e4]
51 -[NSLayoutManager(NSPrivate)
_rectArrayForRange:withinSelectionRange:rangeIsCharRange:singleRectOnly:fullLineRectsOnly:inTextContainer:rectCount:rangeWithinContainer:glyphsDrawOutsideLines:]
+ 58 (UIFoundation + 1820289) [0x7fff61b6e681]
51 -[NSLayoutManager(NSPrivate)
_rectArrayForRange:withinSelectionRange:rangeIsCharRange:singleRectOnly:fullLineRectsOnly:inTextContainer:rectCount:rangeWithinContainer:glyphsDrawOutsideLines:rectArray:rectArrayCapacity:]
+ 748 (UIFoundation + 192486) [0x7fff619e0fe6]
51 _NSFastFillAllLayoutHolesForGlyphRange + 1596
(UIFoundation + 202597) [0x7fff619e3765]
51 -[NSLayoutManager(NSPrivate)
_fillLayoutHoleForCharacterRange:desiredNumberOfLines:isSoft:] + 1106
(UIFoundation + 390033) [0x7fff61a11391]
51 -[NSATSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
+ 283 (UIFoundation + 396147) [0x7fff61a12b73]
51 -[NSATSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
+ 815 (UIFoundation + 396679) [0x7fff61a12d87]
51 -[NSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
+ 241 (UIFoundation + 397071) [0x7fff61a12f0f]
51 -[NSTypesetter
_layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:]
+ 2950 (UIFoundation + 94255) [0x7fff619c902f]
51 -[NSTypesetter
_getRemainingNominalParagraphRange:andParagraphSeparatorRange:charactarIndex:layoutManager:string:]
+ 1233 (UIFoundation + 398399) [0x7fff61a1343f]
51 ??? [0]
51 _sigtramp + 29
(libsystem_platform.dylib + 13821) [0x7fff6abaa5fd]
51 sigactionSegv + 675
(main.c:623,9 in libR.dylib + 1115667) [0x105e89613]
51 Re_ReadConsole + 184 (R +
64824) [0x105c74d38]
51 -[RController
handleReadConsole:] + 158 (R + 27070) [0x105c6b9be]
51 -[RController
doProcessEvents:] + 190 (R + 50030) [0x105c7136e]
51
-[NSApplication(NSEvent)
_nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352 (AppKit +
262256) [0x7fff2dc2a070]
51 _DPSNextEvent +
883 (AppKit + 268329) [0x7fff2dc2b829]
51
_BlockUntilNextEventMatchingListInModeWithFilter + 64 (HIToolbox +
193913) [0x7fff2f5e3579]
51
ReceiveNextEventCommon + 584 (HIToolbox + 194517) [0x7fff2f5e37d5]
51
RunCurrentEventLoopInMode + 292 (HIToolbox + 195261) [0x7fff2f5e3abd]
51
CFRunLoopRunSpecific + 462 (CoreFoundation + 532174) [0x7fff309b4ece]
51
__CFRunLoopRun + 1871 (CoreFoundation + 535674) [0x7fff309b5c7a]
51
__CFRunLoopDoTimers + 322 (CoreFoundation + 646871) [0x7fff309d0ed7]
51
__CFRunLoopDoTimer + 859 (CoreFoundation + 648175) [0x7fff309d13ef]
51
__CFRUNLOOP_IS_CALLING_OUT_TO_A_TIMER_CALLBACK_FUNCTION__ + 20
(CoreFoundation + 649353) [0x7fff309d1889]
51
__NSFireDelayedPerform + 415 (Foundation + 636642) [0x7fff330886e2]
51 _NSFastFillAllLayoutHolesForGlyphRange + 1596 (UIFoundation +
202597) [0x7fff619e3765]
51 -[NSLayoutManager(NSPrivate)
_fillLayoutHoleForCharacterRange:desiredNumberOfLines:isSoft:] + 1106
(UIFoundation + 390033) [0x7fff61a11391]
51 -[NSATSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
+ 283 (UIFoundation + 396147) [0x7fff61a12b73]
51 -[NSATSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
+ 815 (UIFoundation + 396679) [0x7fff61a12d87]
51 -[NSTypesetter
layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
+ 241 (UIFoundation + 397071) [0x7fff61a12f0f]
51 -[NSTypesetter
_layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:]
+ 2950 (UIFoundation + 94255) [0x7fff619c902f]
51 -[NSTypesetter
_getRemainingNominalParagraphRange:andParagraphSeparatorRange:charactarIndex:layoutManager:string:]
+ 1233 (UIFoundation + 398399) [0x7fff61a1343f]
51 ??? [0]
13 <Frontmost App>
9 <User mode>
3 <Frontmost App, User mode>
Binary Images:
0x105c65000 - 0x105cecfff org.R-project.R R 4.0.0
GUI 1.71 Catalina build (7827) <1C907587-5382-3CF9-B969-656D72C6C435>
/Applications/R.app/Contents/MacOS/R
0x105d79000 - 0x106080fff libR.dylib
<68A05988-8D8E-3034-95BE-E99CDAD41083>
/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libR.dylib
0x7fff2dbea000 - 0x7fff2e9aafff com.apple.AppKit 6.9
(1894.50.103) <61269B8C-C432-335F-8894-B95C235A41A5>
/System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
0x7fff2f5b4000 - 0x7fff2f8a8fff com.apple.HIToolbox 2.1.1
(994.6) <5C44ACA7-D158-3F9B-8F88-0477510D44FA>
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
0x7fff30933000 - 0x7fff30db2fff com.apple.CoreFoundation
6.9 (1676.105) <6AF8B3CC-BC3F-3869-B9FB-1D881422364E>
/System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x7fff32fed000 - 0x7fff333b2fff com.apple.Foundation 6.9
(1676.105) <1FA28BAB-7296-3A09-8E1E-E62A7D233DB8>
/System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
0x7fff3c478000 - 0x7fff3c6fafff com.apple.QuartzCore 1.11
(841.2) <444E6F22-DFA6-391B-B51F-A96AE69E524D>
/System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
0x7fff619b2000 - 0x7fff61c0afff com.apple.UIFoundation 1.0
(662) <DFD3DD4A-E661-3A12-BB02-06898949617D>
/System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation
0x7fff6a997000 - 0x7fff6a9cdfff libdyld.dylib (750.5)
<7E711A46-5E4D-393C-AEA6-440E2A5CCD0C>
/usr/lib/system/libdyld.dylib
0x7fff6aba7000 - 0x7fff6abaffff libsystem_platform.dylib
(220.100.1) <736920EA-6AE0-3B1B-BBDA-7DCDF0C229DF>
/usr/lib/system/libsystem_platform.dylib
On 6/7/20 5:51 PM, Bob Rudis wrote:
> Are there any entries in Console.app that might help triage?
>
> Have you tried creating a new user on your Mac and seeing if that account has issues performing the same tasks your user account is having?
>
> Having said that, I just grabbed "Mac OS X GUI rev. 7843 for R 4.0.x" from mac.r-project.org (I never use R.app nor do I keep it installed unless testing something) and am running R 4.0.1 on latest Catalina beta — 10.15.6 Beta (19G36e) — and it crashes every time I try to open a .R file (crashlog https://paste.sr.ht/~hrbrmstr/9899f3a7f3c1724cc952b935c3fc39a47cac88ac)
>
>> On Jun 7, 2020, at 16:22, Carl Witthoft <carl using witthoft.com> wrote:
>>
>>
>>
>>
>> Hi,
>> 2 weeks ago I installed R 4.0 on my new Catalina machine. Things seemed to be working fine.
>> Today I installed R 4.01, and now I can't open any FILE.r - no matter what way I try, i.e. double-click the file, drag/drop, or open from the R GUI menu, R hangs with the beachball.
>> I tried giving R full disk access and other privileges via Security settings; no help.
>>
>> So I deleted R 4.01 and reinstalled R 4.0, and dang if I no longer can open files any more! I've tried all the suggestions in the previous thread in this mailing group; no help.
>>
>> What else can I do, or delete, or uninstall, to at least get back to where I was? Right now I'm basically DIW.
>> --
>> Carl Witthoft
>> carl using witthoft.com
>> resume: https://app.box.com/file/498153801347
>>
>> _______________________________________________
>> R-SIG-Mac mailing list
>> R-SIG-Mac using r-project.org
>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
--
Carl Witthoft
carl using witthoft.com
resume: https://app.box.com/file/498153801347
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