[R-SIG-Mac] Can't open files in 4.0 or 4.01
Brandon Hurr
br@ndon@hurr @end|ng |rom gm@||@com
Mon Jun 8 00:22:26 CEST 2020
This sounds exactly like the issue I am still having when I run to open
more than one R script file in R-GUI’s editor. Perhaps it has got worse
with the newer builds?
On Sun, Jun 7, 2020 at 15:16 Carl Witthoft <carl using witthoft.com> wrote:
> I'm not sure what to look for in the Reports sections of Console.app,
> but I did find this report of R exceeding a diagnostic limit of CPU
> usage, which most likely is related to one of the hangs - R.app always
> goes full throttle on one CPU core.
>
> Date/Time: 2020-06-05 18:58:36 -0400
> End time: 2020-06-05 19:00:16 -0400
> OS Version: Mac OS X 10.15.5 (Build 19F101)
> Architecture: x86_64h
> Report Version: 29
> Incident Identifier: E3BE34D3-09C5-4AA9-A89D-A9E5F8F0EB6B
>
> Data Source: Microstackshots
> Shared Cache: 0x3868000 57B2E2F3-10A7-3AAD-AC94-975B957DF535
>
> Command: R
> Path: /Applications/R.app/Contents/MacOS/R
> Identifier: org.R-project.R
> Version: R 4.0.0 GUI 1.71 Catalina build (7827)
> PID: 21391
>
> Event: cpu usage
> Action taken: none
> CPU: 90 seconds cpu time over 100 seconds (90% cpu
> average), exceeding limit of 50% cpu over 180 seconds
> CPU limit: 90s
> Limit duration: 180s
> CPU used: 90s
> CPU duration: 100s
> Duration: 100.35s
> Duration Sampled: 87.74s
> Steps: 51
>
> Hardware model: iMac19,2
> Active cpus: 4
>
> Fan speed: 1200 rpm
>
> Heaviest stack for the target process:
> 51 start + 1 (libdyld.dylib + 109769) [0x7fff6a9b1cc9]
> 51 main + 720 (R + 8032) [0x105c66f60]
> 51 -[NSApplication finishLaunching] + 2601 (AppKit + 207160)
> [0x7fff2dc1c938]
> 51 -[NSApplication _postDidFinishNotification] + 312 (AppKit +
> 306403) [0x7fff2dc34ce3]
> 51 -[NSNotificationCenter postNotificationName:object:userInfo:] +
> 59 (Foundation + 38790) [0x7fff32ff6786]
> 51 _CFXNotificationPost + 1351 (CoreFoundation + 297529)
> [0x7fff3097ba39]
> 51 -[_CFXNotificationRegistrar find:object:observer:enumerator:] +
> 1554 (CoreFoundation + 300429) [0x7fff3097c58d]
> 51 ___CFXNotificationPost_block_invoke + 80 (CoreFoundation +
> 496660) [0x7fff309ac414]
> 51 _CFXRegistrationPost1 + 372 (CoreFoundation + 497576)
> [0x7fff309ac7a8]
> 51 ___CFXRegistrationPost1_block_invoke + 63 (CoreFoundation +
> 497715) [0x7fff309ac833]
> 51 __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 12
> (CoreFoundation + 497823) [0x7fff309ac89f]
> 51 -[RController applicationDidFinishLaunching:] + 1176 (R + 15960)
> [0x105c68e58]
> 51 -[REngine executeString:] + 286 (R + 76926) [0x105c77c7e]
> 51 -[NSRunLoop(NSRunLoop) runMode:beforeDate:] + 212 (Foundation +
> 393672) [0x7fff3304d1c8]
> 51 CFRunLoopRunSpecific + 462 (CoreFoundation + 532174)
> [0x7fff309b4ece]
> 51 __CFRunLoopRun + 874 (CoreFoundation + 534677) [0x7fff309b5895]
> 51 __CFRunLoopDoObservers + 457 (CoreFoundation + 537335)
> [0x7fff309b62f7]
> 51 __CFRUNLOOP_IS_CALLING_OUT_TO_AN_OBSERVER_CALLBACK_FUNCTION__ +
> 23 (CoreFoundation + 537541) [0x7fff309b63c5]
> 51 ___NSRunLoopObserverCreateWithHandler_block_invoke + 41 (AppKit +
> 9439312) [0x7fff2e4ea850]
> 51 __62+[CATransaction(NSCATransaction)
> NS_setFlushesWithDisplayLink]_block_invoke + 266 (AppKit + 1971601)
> [0x7fff2ddcb591]
> 51 CA::Transaction::commit() + 644 (QuartzCore + 8352) [0x7fff3c47a0a0]
> 51 CA::Context::commit_transaction(CA::Transaction*, double) + 334
> (QuartzCore + 13494) [0x7fff3c47b4b6]
> 51 CA::Layer::display_if_needed(CA::Transaction*) + 757 (QuartzCore
> + 152061) [0x7fff3c49d1fd]
> 51 -[_NSViewBackingLayer display] + 800 (AppKit + 1231223)
> [0x7fff2dd16977]
> 51 -[_NSBackingLayer display] + 537 (AppKit + 1879690) [0x7fff2ddb4e8a]
> 51 -[CALayer _display] + 2103 (QuartzCore + 156002) [0x7fff3c49e162]
> 51 invocation function for block in CA::Layer::display_() + 53
> (QuartzCore + 550873) [0x7fff3c4fe7d9]
> 51 CABackingStoreUpdate_ + 595 (QuartzCore + 158813) [0x7fff3c49ec5d]
> 51 -[NSView(NSLayerKitGlue)
> _drawViewBackingLayer:inContext:drawingHandler:] + 1271 (AppKit +
> 1881242) [0x7fff2ddb549a]
> 51 -[NSView(NSInternal)
> _recursive:displayRectIgnoringOpacity:inContext:stopAtLayerBackedViews:]
> + 2170 (AppKit + 1884318) [0x7fff2ddb609e]
> 51 _NSViewDrawRect + 139 (AppKit + 1887631) [0x7fff2ddb6d8f]
> 51 -[_NSRulerContentView drawRect:] + 157 (AppKit + 7667047)
> [0x7fff2e339d67]
> 51 -[NSRulerView _drawContentRect:] + 233 (AppKit + 7663663)
> [0x7fff2e33902f]
> 51 -[NoodleLineNumberView drawHashMarksAndLabelsInRect:] + 345 (R +
> 338153) [0x105cb78e9]
> 51 -[NSLayoutManager(NSPrivate)
> _glyphRangeForBoundingRect:inTextContainer:fast:okToFillHoles:] + 857
> (UIFoundation + 336155) [0x7fff61a0411b]
> 51 -[NSLayoutManager(NSPrivate)
> _firstPassGlyphRangeForBoundingRect:inTextContainer:okToFillHoles:] +
> 1441 (UIFoundation + 341594) [0x7fff61a0565a]
> 51 _NSFastFillAllLayoutHolesForGlyphRange + 1863 (UIFoundation +
> 202864) [0x7fff619e3870]
> 51 _resizeTextViewsIfNeeded + 284 (UIFoundation + 427013)
> [0x7fff61a1a405]
> 51 -[NSLayoutManager(NSPrivate) _resizeTextViewForTextContainer:] +
> 1103 (UIFoundation + 144184) [0x7fff619d5338]
> 51 -[NSTextView setConstrainedFrameSize:] + 591 (AppKit + 1539771)
> [0x7fff2dd61ebb]
> 51 -[NSTextView setFrameSize:] + 145 (AppKit + 2123877)
> [0x7fff2ddf0865]
> 51 -[NSTextView(NSPrivate) _setFrameSize:forceScroll:] + 962 (AppKit
> + 2125105) [0x7fff2ddf0d31]
> 51 -[NSView setFrameSize:] + 1800 (AppKit + 501964) [0x7fff2dc648cc]
> 51 -[NSView(NSInternal) _updateLayerGeometryFromView] + 776 (AppKit
> + 402692) [0x7fff2dc4c504]
> 51 -[NSView setNeedsDisplay:] + 52 (AppKit + 395124) [0x7fff2dc4a774]
> 51 -[NSTextView setNeedsDisplayInRect:avoidAdditionalLayout:] + 1040
> (AppKit + 1536469) [0x7fff2dd611d5]
> 51 -[NSLayoutManager(NSPrivate)
> _glyphRangeForBoundingRect:inTextContainer:fast:okToFillHoles:] + 857
> (UIFoundation + 336155) [0x7fff61a0411b]
> 51 -[NSLayoutManager(NSPrivate)
> _firstPassGlyphRangeForBoundingRect:inTextContainer:okToFillHoles:] +
> 1441 (UIFoundation + 341594) [0x7fff61a0565a]
> 51 _NSFastFillAllLayoutHolesForGlyphRange + 1596 (UIFoundation +
> 202597) [0x7fff619e3765]
> 51 -[NSLayoutManager(NSPrivate)
> _fillLayoutHoleForCharacterRange:desiredNumberOfLines:isSoft:] + 1106
> (UIFoundation + 390033) [0x7fff61a11391]
> 51 -[NSATSTypesetter
> layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
> + 815 (UIFoundation + 396679) [0x7fff61a12d87]
> 51 -[NSTypesetter
> layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
> + 241 (UIFoundation + 397071) [0x7fff61a12f0f]
> 51 -[NSTypesetter
> _layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:]
>
> + 3120 (UIFoundation + 94425) [0x7fff619c90d9]
> 51 -[NSATSTypesetter layoutParagraphAtPoint:] + 181 (UIFoundation +
> 399167) [0x7fff61a1373f]
> 51 -[NSATSTypesetter
> _layoutLineFragmentStartingWithGlyphAtIndex:characterIndex:atPoint:renderingContext:]
>
> + 6960 (UIFoundation + 285726) [0x7fff619f7c1e]
> 51 -[NSLayoutManager(NSPrivate)
> setLineFragmentRect:forGlyphRange:usedRect:baselineOffset:] + 85
> (UIFoundation + 413988) [0x7fff61a17124]
> 51 -[NSLayoutManager setLineFragmentRect:forGlyphRange:usedRect:] +
> 328 (UIFoundation + 414361) [0x7fff61a17299]
> 51 -[NSLayoutManager(NSPrivate)
> _updateUsageForTextContainer:addingUsedRect:] + 529 (UIFoundation +
> 123653) [0x7fff619d0305]
> 51 -[NSLayoutManager(NSPrivate) _resizeTextViewForTextContainer:] +
> 1103 (UIFoundation + 144184) [0x7fff619d5338]
> 51 -[NSTextView setConstrainedFrameSize:] + 591 (AppKit + 1539771)
> [0x7fff2dd61ebb]
> 51 -[NSTextView setFrameSize:] + 145 (AppKit + 2123877)
> [0x7fff2ddf0865]
> 51 -[NSTextView(NSPrivate) _setFrameSize:forceScroll:] + 962 (AppKit
> + 2125105) [0x7fff2ddf0d31]
> 51 -[NSView setFrameSize:] + 3248 (AppKit + 503412) [0x7fff2dc64e74]
> 51 -[NSView _postFrameChangeNotification] + 82 (AppKit + 532785)
> [0x7fff2dc6c131]
> 51 -[NSClipView _reflectDocumentViewFrameChange] + 634 (AppKit +
> 812362) [0x7fff2dcb054a]
> 51 __45-[NSClipView _reflectDocumentViewFrameChange]_block_invoke +
> 95 (AppKit + 812882) [0x7fff2dcb0752]
> 51 -[NSScrollView reflectScrolledClipView:] + 774 (AppKit + 876231)
> [0x7fff2dcbfec7]
> 51 -[NSScrollView _tileWithoutRecursing] + 35 (AppKit + 939709)
> [0x7fff2dccf6bd]
> 51 -[NSScrollView tile] + 680 (AppKit + 940418) [0x7fff2dccf982]
> 51 -[NSScrollView _setContentViewFrame:] + 328 (AppKit + 953695)
> [0x7fff2dcd2d5f]
> 51 -[NSView setFrame:] + 423 (AppKit + 575534) [0x7fff2dc7682e]
> 51 -[NSClipView setFrameSize:] + 425 (AppKit + 810307) [0x7fff2dcafd43]
> 51 -[NSView setFrameSize:] + 2045 (AppKit + 502209) [0x7fff2dc649c1]
> 51 -[NSView resizeSubviewsWithOldSize:] + 525 (AppKit + 652445)
> [0x7fff2dc8949d]
> 51 -[NSView resizeWithOldSuperviewSize:] + 1178 (AppKit + 654713)
> [0x7fff2dc89d79]
> 51 -[NSView setFrame:] + 423 (AppKit + 575534) [0x7fff2dc7682e]
> 51 -[NSTextView setFrameSize:] + 145 (AppKit + 2123877)
> [0x7fff2ddf0865]
> 51 -[NSTextView(NSPrivate) _setFrameSize:forceScroll:] + 1130
> (AppKit + 2125273) [0x7fff2ddf0dd9]
> 51 -[NSLayoutManager boundingRectForGlyphRange:inTextContainer:] +
> 47 (UIFoundation + 451356) [0x7fff61a2031c]
> 51 -[NSLayoutManager(NSPrivate)
> _boundingRectForGlyphRange:inTextContainer:fast:fullLineRectsOnly:] +
> 108 (UIFoundation + 432612) [0x7fff61a1b9e4]
> 51 -[NSLayoutManager(NSPrivate)
> _rectArrayForRange:withinSelectionRange:rangeIsCharRange:singleRectOnly:fullLineRectsOnly:inTextContainer:rectCount:rangeWithinContainer:glyphsDrawOutsideLines:]
>
> + 58 (UIFoundation + 1820289) [0x7fff61b6e681]
> 51 -[NSLayoutManager(NSPrivate)
> _rectArrayForRange:withinSelectionRange:rangeIsCharRange:singleRectOnly:fullLineRectsOnly:inTextContainer:rectCount:rangeWithinContainer:glyphsDrawOutsideLines:rectArray:rectArrayCapacity:]
>
> + 748 (UIFoundation + 192486) [0x7fff619e0fe6]
> 51 _NSFastFillAllLayoutHolesForGlyphRange + 1596 (UIFoundation +
> 202597) [0x7fff619e3765]
> 51 -[NSLayoutManager(NSPrivate)
> _fillLayoutHoleForCharacterRange:desiredNumberOfLines:isSoft:] + 1106
> (UIFoundation + 390033) [0x7fff61a11391]
> 51 -[NSATSTypesetter
> layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
> + 283 (UIFoundation + 396147) [0x7fff61a12b73]
> 51 -[NSATSTypesetter
> layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
> + 815 (UIFoundation + 396679) [0x7fff61a12d87]
> 51 -[NSTypesetter
> layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
> + 241 (UIFoundation + 397071) [0x7fff61a12f0f]
> 51 -[NSTypesetter
> _layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:]
>
> + 2950 (UIFoundation + 94255) [0x7fff619c902f]
> 51 -[NSTypesetter
> _getRemainingNominalParagraphRange:andParagraphSeparatorRange:charactarIndex:layoutManager:string:]
>
> + 1233 (UIFoundation + 398399) [0x7fff61a1343f]
> 51 ??? [0]
> 51 _sigtramp + 29 (libsystem_platform.dylib + 13821) [0x7fff6abaa5fd]
> 51 sigactionSegv + 675 (main.c:623,9 in libR.dylib + 1115667)
> [0x105e89613]
> 51 Re_ReadConsole + 184 (R + 64824) [0x105c74d38]
> 51 -[RController handleReadConsole:] + 158 (R + 27070) [0x105c6b9be]
> 51 -[RController doProcessEvents:] + 190 (R + 50030) [0x105c7136e]
> 51 -[NSApplication(NSEvent)
> _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352 (AppKit +
> 262256) [0x7fff2dc2a070]
> 51 _DPSNextEvent + 883 (AppKit + 268329) [0x7fff2dc2b829]
> 51 _BlockUntilNextEventMatchingListInModeWithFilter + 64 (HIToolbox
> + 193913) [0x7fff2f5e3579]
> 51 ReceiveNextEventCommon + 584 (HIToolbox + 194517) [0x7fff2f5e37d5]
> 51 RunCurrentEventLoopInMode + 292 (HIToolbox + 195261)
> [0x7fff2f5e3abd]
> 51 CFRunLoopRunSpecific + 462 (CoreFoundation + 532174)
> [0x7fff309b4ece]
> 51 __CFRunLoopRun + 1871 (CoreFoundation + 535674) [0x7fff309b5c7a]
> 51 __CFRunLoopDoTimers + 322 (CoreFoundation + 646871) [0x7fff309d0ed7]
> 51 __CFRunLoopDoTimer + 859 (CoreFoundation + 648175) [0x7fff309d13ef]
> 51 __CFRUNLOOP_IS_CALLING_OUT_TO_A_TIMER_CALLBACK_FUNCTION__ + 20
> (CoreFoundation + 649353) [0x7fff309d1889]
> 51 __NSFireDelayedPerform + 415 (Foundation + 636642) [0x7fff330886e2]
> 51 _NSFastFillAllLayoutHolesForGlyphRange + 1596 (UIFoundation +
> 202597) [0x7fff619e3765]
> 51 -[NSLayoutManager(NSPrivate)
> _fillLayoutHoleForCharacterRange:desiredNumberOfLines:isSoft:] + 1106
> (UIFoundation + 390033) [0x7fff61a11391]
> 51 -[NSATSTypesetter
> layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
> + 283 (UIFoundation + 396147) [0x7fff61a12b73]
> 51 -[NSATSTypesetter
> layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
> + 815 (UIFoundation + 396679) [0x7fff61a12d87]
> 51 -[NSTypesetter
> layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
> + 241 (UIFoundation + 397071) [0x7fff61a12f0f]
> 51 -[NSTypesetter
> _layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:]
>
> + 2950 (UIFoundation + 94255) [0x7fff619c902f]
> 51 -[NSTypesetter
> _getRemainingNominalParagraphRange:andParagraphSeparatorRange:charactarIndex:layoutManager:string:]
>
> + 1233 (UIFoundation + 398399) [0x7fff61a1343f]
> 51 ??? [0]
>
>
> Powerstats for: R [21391]
> UUID: 1C907587-5382-3CF9-B969-656D72C6C435
> Path: /Applications/R.app/Contents/MacOS/R
> Architecture: x86_64
> Footprint: 117.00 MB -> 95.42 MB (-21.57 MB)
> Start time: 2020-06-05 18:58:48 -0400
> End time: 2020-06-05 19:00:16 -0400
> Num samples: 51 (100%)
> CPU Time: 87.750s
> Primary state: 26 samples Non-Frontmost App, Non-Suppressed, Kernel
> mode, Effective Thread QoS User Interactive, Requested Thread QoS User
> Interactive, Override Thread QoS Unspecified
> User Activity: 0 samples Idle, 51 samples Active
> Power Source: 0 samples on Battery, 51 samples on AC
> 51 start + 1 (libdyld.dylib + 109769) [0x7fff6a9b1cc9]
> 51 main + 720 (R + 8032) [0x105c66f60]
> 51 -[NSApplication finishLaunching] + 2601 (AppKit + 207160)
> [0x7fff2dc1c938]
> 51 -[NSApplication _postDidFinishNotification] + 312 (AppKit +
> 306403) [0x7fff2dc34ce3]
> 51 -[NSNotificationCenter
> postNotificationName:object:userInfo:] + 59 (Foundation + 38790)
> [0x7fff32ff6786]
> 51 _CFXNotificationPost + 1351 (CoreFoundation + 297529)
> [0x7fff3097ba39]
> 51 -[_CFXNotificationRegistrar
> find:object:observer:enumerator:] + 1554 (CoreFoundation + 300429)
> [0x7fff3097c58d]
> 51 ___CFXNotificationPost_block_invoke + 80
> (CoreFoundation + 496660) [0x7fff309ac414]
> 51 _CFXRegistrationPost1 + 372 (CoreFoundation +
> 497576) [0x7fff309ac7a8]
> 51 ___CFXRegistrationPost1_block_invoke + 63
> (CoreFoundation + 497715) [0x7fff309ac833]
> 51
> __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 12
> (CoreFoundation + 497823) [0x7fff309ac89f]
> 51 -[RController
> applicationDidFinishLaunching:] + 1176 (R + 15960) [0x105c68e58]
> 51 -[REngine executeString:] + 286 (R +
> 76926) [0x105c77c7e]
> 51 -[NSRunLoop(NSRunLoop)
> runMode:beforeDate:] + 212 (Foundation + 393672) [0x7fff3304d1c8]
> 51 CFRunLoopRunSpecific + 462
> (CoreFoundation + 532174) [0x7fff309b4ece]
> 51 __CFRunLoopRun + 874
> (CoreFoundation + 534677) [0x7fff309b5895]
> 51 __CFRunLoopDoObservers + 457
> (CoreFoundation + 537335) [0x7fff309b62f7]
> 51
> __CFRUNLOOP_IS_CALLING_OUT_TO_AN_OBSERVER_CALLBACK_FUNCTION__ + 23
> (CoreFoundation + 537541) [0x7fff309b63c5]
> 51
> ___NSRunLoopObserverCreateWithHandler_block_invoke + 41 (AppKit +
> 9439312) [0x7fff2e4ea850]
> 51
> __62+[CATransaction(NSCATransaction)
> NS_setFlushesWithDisplayLink]_block_invoke + 266 (AppKit + 1971601)
> [0x7fff2ddcb591]
> 51 CA::Transaction::commit()
> + 644 (QuartzCore + 8352) [0x7fff3c47a0a0]
> 51
> CA::Context::commit_transaction(CA::Transaction*, double) + 334
> (QuartzCore + 13494) [0x7fff3c47b4b6]
> 51
> CA::Layer::display_if_needed(CA::Transaction*) + 757 (QuartzCore +
> 152061) [0x7fff3c49d1fd]
> 51
> -[_NSViewBackingLayer display] + 800 (AppKit + 1231223) [0x7fff2dd16977]
> 51 -[_NSBackingLayer
> display] + 537 (AppKit + 1879690) [0x7fff2ddb4e8a]
> 51 -[CALayer
> _display] + 2103 (QuartzCore + 156002) [0x7fff3c49e162]
> 51 invocation
> function for block in CA::Layer::display_() + 53 (QuartzCore + 550873)
> [0x7fff3c4fe7d9]
> 51
> CABackingStoreUpdate_ + 595 (QuartzCore + 158813) [0x7fff3c49ec5d]
> 51
> -[NSView(NSLayerKitGlue)
> _drawViewBackingLayer:inContext:drawingHandler:] + 1271 (AppKit +
> 1881242) [0x7fff2ddb549a]
> 51
> -[NSView(NSInternal)
> _recursive:displayRectIgnoringOpacity:inContext:stopAtLayerBackedViews:]
> + 2170 (AppKit + 1884318) [0x7fff2ddb609e]
> 51
> _NSViewDrawRect + 139 (AppKit + 1887631) [0x7fff2ddb6d8f]
> 51
> -[_NSRulerContentView drawRect:] + 157 (AppKit + 7667047) [0x7fff2e339d67]
> 51
> -[NSRulerView _drawContentRect:] + 233 (AppKit + 7663663) [0x7fff2e33902f]
> 51
> -[NoodleLineNumberView drawHashMarksAndLabelsInRect:] + 345 (R + 338153)
> [0x105cb78e9]
>
> 51 -[NSLayoutManager(NSPrivate)
> _glyphRangeForBoundingRect:inTextContainer:fast:okToFillHoles:] + 857
> (UIFoundation + 336155) [0x7fff61a0411b]
>
> 51 -[NSLayoutManager(NSPrivate)
> _firstPassGlyphRangeForBoundingRect:inTextContainer:okToFillHoles:] +
> 1441 (UIFoundation + 341594) [0x7fff61a0565a]
>
> 51 _NSFastFillAllLayoutHolesForGlyphRange + 1863 (UIFoundation +
> 202864) [0x7fff619e3870]
>
> 51 _resizeTextViewsIfNeeded + 284 (UIFoundation + 427013)
> [0x7fff61a1a405]
>
> 51 -[NSLayoutManager(NSPrivate)
> _resizeTextViewForTextContainer:] + 1103 (UIFoundation + 144184)
> [0x7fff619d5338]
>
> 51 -[NSTextView setConstrainedFrameSize:] + 591 (AppKit +
> 1539771) [0x7fff2dd61ebb]
>
> 51 -[NSTextView setFrameSize:] + 145 (AppKit + 2123877)
> [0x7fff2ddf0865]
>
> 51 -[NSTextView(NSPrivate) _setFrameSize:forceScroll:] +
> 962 (AppKit + 2125105) [0x7fff2ddf0d31]
>
> 51 -[NSView setFrameSize:] + 1800 (AppKit + 501964)
> [0x7fff2dc648cc]
>
> 51 -[NSView(NSInternal) _updateLayerGeometryFromView]
> + 776 (AppKit + 402692) [0x7fff2dc4c504]
>
> 51 -[NSView setNeedsDisplay:] + 52 (AppKit + 395124)
> [0x7fff2dc4a774]
>
> 51 -[NSTextView
> setNeedsDisplayInRect:avoidAdditionalLayout:] + 1040 (AppKit + 1536469)
> [0x7fff2dd611d5]
>
> 51 -[NSLayoutManager(NSPrivate)
> _glyphRangeForBoundingRect:inTextContainer:fast:okToFillHoles:] + 857
> (UIFoundation + 336155) [0x7fff61a0411b]
>
> 51 -[NSLayoutManager(NSPrivate)
> _firstPassGlyphRangeForBoundingRect:inTextContainer:okToFillHoles:] +
> 1441 (UIFoundation + 341594) [0x7fff61a0565a]
>
> 51 _NSFastFillAllLayoutHolesForGlyphRange +
> 1596 (UIFoundation + 202597) [0x7fff619e3765]
>
> 51 -[NSLayoutManager(NSPrivate)
> _fillLayoutHoleForCharacterRange:desiredNumberOfLines:isSoft:] + 1106
> (UIFoundation + 390033) [0x7fff61a11391]
>
> 51 -[NSATSTypesetter
> layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
> + 815 (UIFoundation + 396679) [0x7fff61a12d87]
>
> 51 -[NSTypesetter
> layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
> + 241 (UIFoundation + 397071) [0x7fff61a12f0f]
>
> 51 -[NSTypesetter
> _layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:]
>
> + 3120 (UIFoundation + 94425) [0x7fff619c90d9]
>
> 51 -[NSATSTypesetter
> layoutParagraphAtPoint:] + 181 (UIFoundation + 399167) [0x7fff61a1373f]
>
> 51 -[NSATSTypesetter
> _layoutLineFragmentStartingWithGlyphAtIndex:characterIndex:atPoint:renderingContext:]
>
> + 6960 (UIFoundation + 285726) [0x7fff619f7c1e]
>
> 51
> -[NSLayoutManager(NSPrivate)
> setLineFragmentRect:forGlyphRange:usedRect:baselineOffset:] + 85
> (UIFoundation + 413988) [0x7fff61a17124]
>
> 51 -[NSLayoutManager
> setLineFragmentRect:forGlyphRange:usedRect:] + 328 (UIFoundation +
> 414361) [0x7fff61a17299]
>
> 51
> -[NSLayoutManager(NSPrivate)
> _updateUsageForTextContainer:addingUsedRect:] + 529 (UIFoundation +
> 123653) [0x7fff619d0305]
>
> 51
> -[NSLayoutManager(NSPrivate) _resizeTextViewForTextContainer:] + 1103
> (UIFoundation + 144184) [0x7fff619d5338]
>
> 51 -[NSTextView
> setConstrainedFrameSize:] + 591 (AppKit + 1539771) [0x7fff2dd61ebb]
>
> 51 -[NSTextView
> setFrameSize:] + 145 (AppKit + 2123877) [0x7fff2ddf0865]
>
> 51
> -[NSTextView(NSPrivate) _setFrameSize:forceScroll:] + 962 (AppKit +
> 2125105) [0x7fff2ddf0d31]
>
> 51 -[NSView
> setFrameSize:] + 3248 (AppKit + 503412) [0x7fff2dc64e74]
>
> 51 -[NSView
> _postFrameChangeNotification] + 82 (AppKit + 532785) [0x7fff2dc6c131]
>
> 51
> -[NSClipView _reflectDocumentViewFrameChange] + 634 (AppKit + 812362)
> [0x7fff2dcb054a]
>
> 51
> __45-[NSClipView _reflectDocumentViewFrameChange]_block_invoke + 95
> (AppKit + 812882) [0x7fff2dcb0752]
>
> 51
> -[NSScrollView reflectScrolledClipView:] + 774 (AppKit + 876231)
> [0x7fff2dcbfec7]
>
> 51
> -[NSScrollView _tileWithoutRecursing] + 35 (AppKit + 939709)
> [0x7fff2dccf6bd]
>
> 51
> -[NSScrollView tile] + 680 (AppKit + 940418) [0x7fff2dccf982]
>
> 51
> -[NSScrollView _setContentViewFrame:] + 328 (AppKit + 953695)
> [0x7fff2dcd2d5f]
>
>
> 51 -[NSView setFrame:] + 423 (AppKit + 575534) [0x7fff2dc7682e]
>
>
> 51 -[NSClipView setFrameSize:] + 425 (AppKit + 810307) [0x7fff2dcafd43]
>
>
> 51 -[NSView setFrameSize:] + 2045 (AppKit + 502209) [0x7fff2dc649c1]
>
>
> 51 -[NSView resizeSubviewsWithOldSize:] + 525 (AppKit + 652445)
> [0x7fff2dc8949d]
>
>
> 51 -[NSView resizeWithOldSuperviewSize:] + 1178 (AppKit +
> 654713) [0x7fff2dc89d79]
>
>
> 51 -[NSView setFrame:] + 423 (AppKit + 575534) [0x7fff2dc7682e]
>
>
> 51 -[NSTextView setFrameSize:] + 145 (AppKit + 2123877)
> [0x7fff2ddf0865]
>
>
> 51 -[NSTextView(NSPrivate) _setFrameSize:forceScroll:] +
> 1130 (AppKit + 2125273) [0x7fff2ddf0dd9]
>
>
> 51 -[NSLayoutManager
> boundingRectForGlyphRange:inTextContainer:] + 47 (UIFoundation + 451356)
> [0x7fff61a2031c]
>
>
> 51 -[NSLayoutManager(NSPrivate)
> _boundingRectForGlyphRange:inTextContainer:fast:fullLineRectsOnly:] +
> 108 (UIFoundation + 432612) [0x7fff61a1b9e4]
>
>
> 51 -[NSLayoutManager(NSPrivate)
> _rectArrayForRange:withinSelectionRange:rangeIsCharRange:singleRectOnly:fullLineRectsOnly:inTextContainer:rectCount:rangeWithinContainer:glyphsDrawOutsideLines:]
>
> + 58 (UIFoundation + 1820289) [0x7fff61b6e681]
>
>
> 51 -[NSLayoutManager(NSPrivate)
> _rectArrayForRange:withinSelectionRange:rangeIsCharRange:singleRectOnly:fullLineRectsOnly:inTextContainer:rectCount:rangeWithinContainer:glyphsDrawOutsideLines:rectArray:rectArrayCapacity:]
>
> + 748 (UIFoundation + 192486) [0x7fff619e0fe6]
>
>
> 51 _NSFastFillAllLayoutHolesForGlyphRange + 1596
> (UIFoundation + 202597) [0x7fff619e3765]
>
>
> 51 -[NSLayoutManager(NSPrivate)
> _fillLayoutHoleForCharacterRange:desiredNumberOfLines:isSoft:] + 1106
> (UIFoundation + 390033) [0x7fff61a11391]
>
>
> 51 -[NSATSTypesetter
> layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
> + 283 (UIFoundation + 396147) [0x7fff61a12b73]
>
>
> 51 -[NSATSTypesetter
> layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
> + 815 (UIFoundation + 396679) [0x7fff61a12d87]
>
>
> 51 -[NSTypesetter
> layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
> + 241 (UIFoundation + 397071) [0x7fff61a12f0f]
>
>
> 51 -[NSTypesetter
> _layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:]
>
> + 2950 (UIFoundation + 94255) [0x7fff619c902f]
>
>
> 51 -[NSTypesetter
> _getRemainingNominalParagraphRange:andParagraphSeparatorRange:charactarIndex:layoutManager:string:]
>
> + 1233 (UIFoundation + 398399) [0x7fff61a1343f]
>
>
> 51 ??? [0]
>
>
> 51 _sigtramp + 29
> (libsystem_platform.dylib + 13821) [0x7fff6abaa5fd]
>
>
> 51 sigactionSegv + 675
> (main.c:623,9 in libR.dylib + 1115667) [0x105e89613]
>
>
> 51 Re_ReadConsole + 184 (R +
> 64824) [0x105c74d38]
>
>
> 51 -[RController
> handleReadConsole:] + 158 (R + 27070) [0x105c6b9be]
>
>
> 51 -[RController
> doProcessEvents:] + 190 (R + 50030) [0x105c7136e]
>
>
> 51
> -[NSApplication(NSEvent)
> _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352 (AppKit +
> 262256) [0x7fff2dc2a070]
>
>
> 51 _DPSNextEvent +
> 883 (AppKit + 268329) [0x7fff2dc2b829]
>
>
> 51
> _BlockUntilNextEventMatchingListInModeWithFilter + 64 (HIToolbox +
> 193913) [0x7fff2f5e3579]
>
>
> 51
> ReceiveNextEventCommon + 584 (HIToolbox + 194517) [0x7fff2f5e37d5]
>
>
> 51
> RunCurrentEventLoopInMode + 292 (HIToolbox + 195261) [0x7fff2f5e3abd]
>
>
> 51
> CFRunLoopRunSpecific + 462 (CoreFoundation + 532174) [0x7fff309b4ece]
>
>
> 51
> __CFRunLoopRun + 1871 (CoreFoundation + 535674) [0x7fff309b5c7a]
>
>
> 51
> __CFRunLoopDoTimers + 322 (CoreFoundation + 646871) [0x7fff309d0ed7]
>
>
> 51
> __CFRunLoopDoTimer + 859 (CoreFoundation + 648175) [0x7fff309d13ef]
>
>
> 51
> __CFRUNLOOP_IS_CALLING_OUT_TO_A_TIMER_CALLBACK_FUNCTION__ + 20
> (CoreFoundation + 649353) [0x7fff309d1889]
>
>
> 51
> __NSFireDelayedPerform + 415 (Foundation + 636642) [0x7fff330886e2]
>
>
>
> 51 _NSFastFillAllLayoutHolesForGlyphRange + 1596 (UIFoundation +
> 202597) [0x7fff619e3765]
>
>
>
> 51 -[NSLayoutManager(NSPrivate)
> _fillLayoutHoleForCharacterRange:desiredNumberOfLines:isSoft:] + 1106
> (UIFoundation + 390033) [0x7fff61a11391]
>
>
>
> 51 -[NSATSTypesetter
> layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
> + 283 (UIFoundation + 396147) [0x7fff61a12b73]
>
>
>
> 51 -[NSATSTypesetter
> layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
> + 815 (UIFoundation + 396679) [0x7fff61a12d87]
>
>
>
> 51 -[NSTypesetter
> layoutCharactersInRange:forLayoutManager:maximumNumberOfLineFragments:]
> + 241 (UIFoundation + 397071) [0x7fff61a12f0f]
>
>
>
> 51 -[NSTypesetter
> _layoutGlyphsInLayoutManager:startingAtGlyphIndex:maxNumberOfLineFragments:maxCharacterIndex:nextGlyphIndex:nextCharacterIndex:]
>
> + 2950 (UIFoundation + 94255) [0x7fff619c902f]
>
>
>
> 51 -[NSTypesetter
> _getRemainingNominalParagraphRange:andParagraphSeparatorRange:charactarIndex:layoutManager:string:]
>
> + 1233 (UIFoundation + 398399) [0x7fff61a1343f]
>
>
>
> 51 ??? [0]
>
>
>
> 13 <Frontmost App>
>
>
>
> 9 <User mode>
>
>
>
> 3 <Frontmost App, User mode>
>
> Binary Images:
> 0x105c65000 - 0x105cecfff org.R-project.R R 4.0.0
> GUI 1.71 Catalina build (7827) <1C907587-5382-3CF9-B969-656D72C6C435>
> /Applications/R.app/Contents/MacOS/R
> 0x105d79000 - 0x106080fff libR.dylib
> <68A05988-8D8E-3034-95BE-E99CDAD41083>
> /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libR.dylib
> 0x7fff2dbea000 - 0x7fff2e9aafff com.apple.AppKit 6.9
> (1894.50.103) <61269B8C-C432-335F-8894-B95C235A41A5>
> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
> 0x7fff2f5b4000 - 0x7fff2f8a8fff com.apple.HIToolbox 2.1.1
> (994.6) <5C44ACA7-D158-3F9B-8F88-0477510D44FA>
>
> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
> 0x7fff30933000 - 0x7fff30db2fff com.apple.CoreFoundation
> 6.9 (1676.105) <6AF8B3CC-BC3F-3869-B9FB-1D881422364E>
>
> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
> 0x7fff32fed000 - 0x7fff333b2fff com.apple.Foundation 6.9
> (1676.105) <1FA28BAB-7296-3A09-8E1E-E62A7D233DB8>
> /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
> 0x7fff3c478000 - 0x7fff3c6fafff com.apple.QuartzCore 1.11
> (841.2) <444E6F22-DFA6-391B-B51F-A96AE69E524D>
> /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
> 0x7fff619b2000 - 0x7fff61c0afff com.apple.UIFoundation 1.0
> (662) <DFD3DD4A-E661-3A12-BB02-06898949617D>
>
> /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation
> 0x7fff6a997000 - 0x7fff6a9cdfff libdyld.dylib (750.5)
> <7E711A46-5E4D-393C-AEA6-440E2A5CCD0C>
> /usr/lib/system/libdyld.dylib
> 0x7fff6aba7000 - 0x7fff6abaffff libsystem_platform.dylib
> (220.100.1) <736920EA-6AE0-3B1B-BBDA-7DCDF0C229DF>
> /usr/lib/system/libsystem_platform.dylib
>
>
>
> On 6/7/20 5:51 PM, Bob Rudis wrote:
> > Are there any entries in Console.app that might help triage?
> >
> > Have you tried creating a new user on your Mac and seeing if that
> account has issues performing the same tasks your user account is having?
> >
> > Having said that, I just grabbed "Mac OS X GUI rev. 7843 for R 4.0.x"
> from mac.r-project.org (I never use R.app nor do I keep it installed
> unless testing something) and am running R 4.0.1 on latest Catalina beta —
> 10.15.6 Beta (19G36e) — and it crashes every time I try to open a .R file
> (crashlog
> https://paste.sr.ht/~hrbrmstr/9899f3a7f3c1724cc952b935c3fc39a47cac88ac)
> >
> >> On Jun 7, 2020, at 16:22, Carl Witthoft <carl using witthoft.com> wrote:
> >>
> >>
> >>
> >>
> >> Hi,
> >> 2 weeks ago I installed R 4.0 on my new Catalina machine. Things seemed
> to be working fine.
> >> Today I installed R 4.01, and now I can't open any FILE.r - no matter
> what way I try, i.e. double-click the file, drag/drop, or open from the R
> GUI menu, R hangs with the beachball.
> >> I tried giving R full disk access and other privileges via Security
> settings; no help.
> >>
> >> So I deleted R 4.01 and reinstalled R 4.0, and dang if I no longer can
> open files any more! I've tried all the suggestions in the previous thread
> in this mailing group; no help.
> >>
> >> What else can I do, or delete, or uninstall, to at least get back to
> where I was? Right now I'm basically DIW.
> >> --
> >> Carl Witthoft
> >> carl using witthoft.com
> >> resume: https://app.box.com/file/498153801347
> >>
> >> _______________________________________________
> >> R-SIG-Mac mailing list
> >> R-SIG-Mac using r-project.org
> >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> >
>
> --
> Carl Witthoft
> carl using witthoft.com
> resume: https://app.box.com/file/498153801347
>
> _______________________________________________
> R-SIG-Mac mailing list
> R-SIG-Mac using r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
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