[R-SIG-Mac] random message on opening R-app

[Federico Calboli]

> On 12 Jan 2020, at 16:47, Marc Schwartz <marc_schwartz using me.com> wrote:
> 
> 
>> On Jan 12, 2020, at 7:51 AM, Federico Calboli <federico.calboli using kuleuven.be> wrote:
>> 
>> Hi All,
>> 
>> just to check whether I am the only one (or one of the lucky few) who randomly get the message (I posted it before but we did not seem to find a solution then):
>> 
>> 2020-01-12 14:45:19.462 R[4163:3012268] Failed to connect (separatorView) outlet from (NSView) to (NSTitlebarSeparatorView): missing setter or instance variable
>> 
>> on opening R-app.
>> 
>> sessionInfo()
>> R version 3.6.2 (2019-12-12)
>> Platform: x86_64-apple-darwin15.6.0 (64-bit)
>> Running under: macOS Mojave 10.14.6
>> 
>> Matrix products: default
>> BLAS:   /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib
>> LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib
>> 
>> locale:
>> [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
>> 
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base     
>> 
>> loaded via a namespace (and not attached):
>> [1] compiler_3.6.2
>> 
>> 
>> It is harmless but offends my retentive nature — is there a permanent fix?
>> 
>> Cheers
>> 
>> F
> 
> 
> Hi,
> 
> Based upon a reply by Simon to your query last April:
> 
>  https://stat.ethz.ch/pipermail/r-sig-mac/2019-April/012972.html
> 
> while I do not have a definite response, you might try the following:
> 
> 1. Check your ~/.Rprofile to see what if any settings or packages are defined at startup. You might rename the file to something else so that it does not get used, and see if the message persists. If not, then there may be something in that file that you may need to identify through trial and error.

I do not have a .Rprofile, just .Rhistory, .Rapp.history and a directory .R with my Makewars

> 
> 2. Re-install XQuartz, which should done after each R update, to see if there is something related to that.

does not make any difference
> 
> 3. You might consider fully deleting R, all installed packages and R.app, and doing a clean install. The issue you had last April was with 3.6.0, so it is possible that something was corrupted and persists with 3.6.2. A prior post from you in March of last year with the same issue was with 3.5.3, so whatever was happening goes back a bit.

This seems a bit drastic and I would not have the time for a while, I was hoping for a more benign fix (especially if the problem reappears).

Cheers

F


> 
> 
> Not sure if that will get you anywhere, or are perhaps things that you have already tried, but some initial thoughts.
> 
> Regards,
> 
> Marc Schwartz
> 

--
Federico Calboli
LBEG - Laboratory of Biodiversity and Evolutionary Genomics
Charles Deberiotstraat 32 box 2439
3000 Leuven
+32 16 32 87 67