[R-SIG-Mac] R package

[Keith O'Hara]

Can you check if the command line tools are installed by running:

xcode-select --install

in terminal. 

Keith


> On Oct 26, 2016, at 5:28 PM, Kodalore Vijayan, Vineetha W <vwkv13 at mun.ca> wrote:
> 
> Hello,
> 
> I removed gfortran 6.1 and installed gfortran v4.8.2.
> 
> Now i have another error:
> 
> gfortran-4.8  -fPIC -Wall -g -O2  -c  test.f95 -o test.o
> 
> gfortran-4.8: warning: couldn’t understand kern.osversion ‘16.0.0
> 
> gfortran-4.8 -dynamiclib -Wl,-headerpad_max_install_names -undefined
> dynamic_lookup -single_module -multiply_defined suppress
> -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o test.so
> test.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
> -Wl,CoreFoundation
> 
> gfortran-4.8: warning: couldn’t understand kern.osversion ‘16.0.0
> 
> ld: library not found for -ldylib1.o
> 
> collect2: error: ld returned 1 exit status
> 
> make: *** [test.so] Error 1
> 
> 
> Any idea what this means or how I can solve? I have limited knowledge on
> these installations.
> 
> 
> Thanks,
> 
> Vineetha
> 
> On Tue, Oct 25, 2016 at 7:37 AM, Kodalore Vijayan, Vineetha W <vwkv13 at mun.ca
>> wrote:
> 
>> Hi Ken,
>> 
>> Its not working with Makevar anymore. I guess I have to degrade to
>> gfortran4.8.2. Will try that.
>> 
>> Thank you,
>> Vineetha
>> 
>> On Mon, Oct 24, 2016 at 5:32 PM, Ken Beath <ken at kjbeath.com.au> wrote:
>> 
>>> See full instructions at https://stat.ethz.ch/pipermail
>>> /r-sig-mac/2016-September/012056.html thanks to Bob Rudis.
>>> 
>>> Ken
>>> 
>>>> On 25 Oct. 2016, at 9:25 am, Kodalore Vijayan, Vineetha W <
>>> vwkv13 at mun.ca> wrote:
>>>> 
>>>> Hello,
>>>> 
>>>> I have an issue on Mac OS ElCapitan ( just now upgraded to sierra) with
>>>> Xcode 7 and gfortran 6.1 ( downloaded from
>>>> https://gcc.gnu.org/wiki/GFortranBinaries. ).  I'm developing an R
>>> package
>>>> and wants to make it portable.
>>>> 
>>>> The package was working fine until October 18th along with a Makevar
>>> file
>>>> created under ~/.R. The Makevar file contains :
>>>> F77 = gfortran
>>>> FC = gfortran
>>>> FLIBS = -L/usr/local/gfortran/lib
>>>> 
>>>> (Please refer:
>>>> http://stackoverflow.com/questions/40092423/r-package-with-
>>> fortran-source-code-how-to-make-makevars-file-under-pkgna
>>> me-s/40127535#40127535
>>>> ).
>>>> 
>>>> But now when I run R CMD CHECK on my system, its throws the
>>>> following error:
>>>> 
>>>> * installing *source* package ‘EpiILM’ ...
>>>> ** libs
>>>> gfortran-4.8  -fPIC -Wall -g -O2  -c  Edata.f95 -o Edata.o
>>>> make: gfortran-4.8: No such file or directory
>>>> make: *** [Edata.o] Error 1
>>>> ERROR: compilation failed for package ‘EpiILM’
>>>> * removing ‘/Users/Vineetha/Desktop/EpiILM.Rcheck/EpiILM’
>>>> 
>>>> Basically, my Makevar file is not resolving the issue now.  Any help
>>> would
>>>> be appreciated.
>>>> 
>>>> Thanks,
>>>> Vineetha
>>>> 
>>>>      [[alternative HTML version deleted]]
>>>> 
>>>> _______________________________________________
>>>> R-SIG-Mac mailing list
>>>> R-SIG-Mac at r-project.org
>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>> 
>>> 
>> 
> 
> 	[[alternative HTML version deleted]]
> 
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