[R-SIG-Mac] R package

[Kodalore Vijayan, Vineetha W]

yes, its installed now. And now R CMD CHECK gives me the following
warnings.

* installing *source* package ‘pkgname’ ...
** libs
gfortran-4.8  -fPIC -Wall -g -O2  -c  epidata.f95 -o epidata.o
gfortran-4.8: warning: couldn’t understand kern.osversion ‘16.0.0
gfortran-4.8  -fPIC -Wall -g -O2  -c  epilike.f95 -o epilike.o
gfortran-4.8: warning: couldn’t understand kern.osversion ‘16.0.0
gfortran-4.8  -fPIC -Wall -g -O2  -c  epimc.f95 -o epimc.o
gfortran-4.8: warning: couldn’t understand kern.osversion ‘16.0.0
gfortran-4.8 -dynamiclib -Wl,-headerpad_max_install_names -undefined
dynamic_lookup -single_module -multiply_defined suppress
-L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o
pkgname.so epidata.o epilike.o epimc.o -F/Library/Frameworks/R.framework/..
-framework R -Wl,-framework -Wl,CoreFoundation
gfortran-4.8: warning: couldn’t understand kern.osversion ‘16.0.0
ld: warning: object file (epidata.o) was built for newer OSX version
(10.12) than being linked (10.4)
ld: warning: object file (epilike.o) was built for newer OSX version
(10.12) than being linked (10.4)
ld: warning: object file (epimc.o) was built for newer OSX version (10.12)
than being linked (10.4)
installing to /Users/Vineetha/Desktop/pkgname.Rcheck/pkgname/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (pkgname)

-Vineetha

On Wed, Oct 26, 2016 at 3:38 PM, Keith O'Hara <keith.ohara at nyu.edu> wrote:

> Can you check if the command line tools are installed by running:
>
> xcode-select --install
>
> in terminal.
>
> Keith
>
>
> > On Oct 26, 2016, at 5:28 PM, Kodalore Vijayan, Vineetha W <vwkv13 at mun.ca>
> wrote:
> >
> > Hello,
> >
> > I removed gfortran 6.1 and installed gfortran v4.8.2.
> >
> > Now i have another error:
> >
> > gfortran-4.8  -fPIC -Wall -g -O2  -c  test.f95 -o test.o
> >
> > gfortran-4.8: warning: couldn’t understand kern.osversion ‘16.0.0
> >
> > gfortran-4.8 -dynamiclib -Wl,-headerpad_max_install_names -undefined
> > dynamic_lookup -single_module -multiply_defined suppress
> > -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o
> test.so
> > test.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
> > -Wl,CoreFoundation
> >
> > gfortran-4.8: warning: couldn’t understand kern.osversion ‘16.0.0
> >
> > ld: library not found for -ldylib1.o
> >
> > collect2: error: ld returned 1 exit status
> >
> > make: *** [test.so] Error 1
> >
> >
> > Any idea what this means or how I can solve? I have limited knowledge on
> > these installations.
> >
> >
> > Thanks,
> >
> > Vineetha
> >
> > On Tue, Oct 25, 2016 at 7:37 AM, Kodalore Vijayan, Vineetha W <
> vwkv13 at mun.ca
> >> wrote:
> >
> >> Hi Ken,
> >>
> >> Its not working with Makevar anymore. I guess I have to degrade to
> >> gfortran4.8.2. Will try that.
> >>
> >> Thank you,
> >> Vineetha
> >>
> >> On Mon, Oct 24, 2016 at 5:32 PM, Ken Beath <ken at kjbeath.com.au> wrote:
> >>
> >>> See full instructions at https://stat.ethz.ch/pipermail
> >>> /r-sig-mac/2016-September/012056.html thanks to Bob Rudis.
> >>>
> >>> Ken
> >>>
> >>>> On 25 Oct. 2016, at 9:25 am, Kodalore Vijayan, Vineetha W <
> >>> vwkv13 at mun.ca> wrote:
> >>>>
> >>>> Hello,
> >>>>
> >>>> I have an issue on Mac OS ElCapitan ( just now upgraded to sierra)
> with
> >>>> Xcode 7 and gfortran 6.1 ( downloaded from
> >>>> https://gcc.gnu.org/wiki/GFortranBinaries. ).  I'm developing an R
> >>> package
> >>>> and wants to make it portable.
> >>>>
> >>>> The package was working fine until October 18th along with a Makevar
> >>> file
> >>>> created under ~/.R. The Makevar file contains :
> >>>> F77 = gfortran
> >>>> FC = gfortran
> >>>> FLIBS = -L/usr/local/gfortran/lib
> >>>>
> >>>> (Please refer:
> >>>> http://stackoverflow.com/questions/40092423/r-package-with-
> >>> fortran-source-code-how-to-make-makevars-file-under-pkgna
> >>> me-s/40127535#40127535
> >>>> ).
> >>>>
> >>>> But now when I run R CMD CHECK on my system, its throws the
> >>>> following error:
> >>>>
> >>>> * installing *source* package ‘EpiILM’ ...
> >>>> ** libs
> >>>> gfortran-4.8  -fPIC -Wall -g -O2  -c  Edata.f95 -o Edata.o
> >>>> make: gfortran-4.8: No such file or directory
> >>>> make: *** [Edata.o] Error 1
> >>>> ERROR: compilation failed for package ‘EpiILM’
> >>>> * removing ‘/Users/Vineetha/Desktop/EpiILM.Rcheck/EpiILM’
> >>>>
> >>>> Basically, my Makevar file is not resolving the issue now.  Any help
> >>> would
> >>>> be appreciated.
> >>>>
> >>>> Thanks,
> >>>> Vineetha
> >>>>
> >>>>      [[alternative HTML version deleted]]
> >>>>
> >>>> _______________________________________________
> >>>> R-SIG-Mac mailing list
> >>>> R-SIG-Mac at r-project.org
> >>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> >>>
> >>>
> >>
> >
> >       [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > R-SIG-Mac mailing list
> > R-SIG-Mac at r-project.org
> > https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
>

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