[R-SIG-Mac] R package

[Kodalore Vijayan, Vineetha W]

Hello,

 I removed gfortran 6.1 and installed gfortran v4.8.2.

Now i have another error:

gfortran-4.8  -fPIC -Wall -g -O2  -c  test.f95 -o test.o

gfortran-4.8: warning: couldn’t understand kern.osversion ‘16.0.0

gfortran-4.8 -dynamiclib -Wl,-headerpad_max_install_names -undefined
dynamic_lookup -single_module -multiply_defined suppress
-L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o test.so
test.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
-Wl,CoreFoundation

gfortran-4.8: warning: couldn’t understand kern.osversion ‘16.0.0

ld: library not found for -ldylib1.o

collect2: error: ld returned 1 exit status

make: *** [test.so] Error 1


Any idea what this means or how I can solve? I have limited knowledge on
these installations.


Thanks,

Vineetha

On Tue, Oct 25, 2016 at 7:37 AM, Kodalore Vijayan, Vineetha W <vwkv13 at mun.ca
> wrote:

> Hi Ken,
>
>  Its not working with Makevar anymore. I guess I have to degrade to
> gfortran4.8.2. Will try that.
>
> Thank you,
> Vineetha
>
> On Mon, Oct 24, 2016 at 5:32 PM, Ken Beath <ken at kjbeath.com.au> wrote:
>
>> See full instructions at https://stat.ethz.ch/pipermail
>> /r-sig-mac/2016-September/012056.html thanks to Bob Rudis.
>>
>> Ken
>>
>> > On 25 Oct. 2016, at 9:25 am, Kodalore Vijayan, Vineetha W <
>> vwkv13 at mun.ca> wrote:
>> >
>> > Hello,
>> >
>> > I have an issue on Mac OS ElCapitan ( just now upgraded to sierra) with
>> > Xcode 7 and gfortran 6.1 ( downloaded from
>> > https://gcc.gnu.org/wiki/GFortranBinaries. ).  I'm developing an R
>> package
>> > and wants to make it portable.
>> >
>> > The package was working fine until October 18th along with a Makevar
>> file
>> > created under ~/.R. The Makevar file contains :
>> > F77 = gfortran
>> > FC = gfortran
>> > FLIBS = -L/usr/local/gfortran/lib
>> >
>> > (Please refer:
>> > http://stackoverflow.com/questions/40092423/r-package-with-
>> fortran-source-code-how-to-make-makevars-file-under-pkgna
>> me-s/40127535#40127535
>> > ).
>> >
>> > But now when I run R CMD CHECK on my system, its throws the
>> > following error:
>> >
>> > * installing *source* package ‘EpiILM’ ...
>> > ** libs
>> > gfortran-4.8  -fPIC -Wall -g -O2  -c  Edata.f95 -o Edata.o
>> > make: gfortran-4.8: No such file or directory
>> > make: *** [Edata.o] Error 1
>> > ERROR: compilation failed for package ‘EpiILM’
>> > * removing ‘/Users/Vineetha/Desktop/EpiILM.Rcheck/EpiILM’
>> >
>> > Basically, my Makevar file is not resolving the issue now.  Any help
>> would
>> > be appreciated.
>> >
>> > Thanks,
>> > Vineetha
>> >
>> >       [[alternative HTML version deleted]]
>> >
>> > _______________________________________________
>> > R-SIG-Mac mailing list
>> > R-SIG-Mac at r-project.org
>> > https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>
>>
>

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