[R-SIG-Mac] [R-sig-mac] Hmisc installed but won't load

[Steven McKinney]

The complaint is about a component in package latticeExtra.

Do you have this package installed?

(latticExtra does not show as required when I load Hmisc

> require("Hmisc")
Loading required package: Hmisc
Loading required package: grid
Loading required package: lattice
Loading required package: survival
Loading required package: splines
Loading required package: Formula

but I do see latticeExtra in my installed library directory

  /Library/Frameworks/R.framework/Versions/Current/Resources/library )




Steven McKinney

Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre

________________________________________
From: r-sig-mac-bounces at r-project.org [r-sig-mac-bounces at r-project.org] On Behalf Of Don McKenzie [dmck at u.washington.edu]
Sent: March 24, 2014 12:35 PM
To: r-sig-mac at r-project.org
Subject: [R-SIG-Mac] [R-sig-mac] Hmisc installed but won't load

My apologies if this has been addressed recently. Searching the archive and google brought me only to older posts.

I’m not understanding the error message below when I try to load Hmisc. I reinstalled it using the syntax suggested by Simon in an earlier post. I am using the vanilla R GUI ("R 3.0.3 GUI 1.63 Snow Leopard build (6660)”) on OSX 10.9.2.

Thanks in advance.


> install.packages("Hmisc",,"http://cran.r-project.org")
trying URL 'http://cran.r-project.org/bin/macosx/contrib/3.0/Hmisc_3.14-3.tgz'
Content type 'application/x-gzip' length 1555868 bytes (1.5 Mb)
opened URL
==================================================
downloaded 1.5 Mb

The downloaded binary packages are in
        /var/folders/d1/r1hsc_s91pg18v_t23bq27tw0000gn/T//RtmpIPxtRG/downloaded_packages



> library("Hmisc")
Error in gzfile(file, "rb") : cannot open the connection     *****************
In addition: Warning message:
In gzfile(file, "rb") :
  cannot open compressed file '/Library/Frameworks/R.framework/Versions/3.0/Resources/library/latticeExtra/data/Rdata.rdx', probable reason 'No such file or directory'
Error: package or namespace load failed for ‘Hmisc’



> installed.packages()
.
.
.
Hmisc         "Hmisc"         "/Library/Frameworks/R.framework/Versions/3.0/Resources/library" "3.14-3”     NA
.
.
.


> sessionInfo()
R version 3.0.3 (2014-03-06)
Platform: x86_64-apple-darwin10.8.0 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] splines   grid      stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
 [1] Formula_1.1-1   survival_2.37-7 lattice_0.20-27 lavaan_0.5-15   MASS_7.3-29     plspm_0.4.1     turner_0.1.7    tester_0.1.7    diagram_1.6.2   shape_1.4.1     amap_0.8-12

loaded via a namespace (and not attached):
[1] mnormt_1.4-7       pbivnorm_0.5-1     quadprog_1.5-5     RColorBrewer_1.0-5 stats4_3.0.3       tools_3.0.3




Don McKenzie
Research Ecologist
Pacific Wildland Fire Sciences Lab
US Forest Service

Affiliate Professor
School of Environmental and Forest Sciences
University of Washington
dmck at uw.edu

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