[R-SIG-Mac] [R-sig-mac] Hmisc installed but won't load

[Don McKenzie]

The plot thickens. I do indeed have latticeExtra installed, but observe. Is it turtles on down…? (and yes I have lattice installed too)

> library("latticeExtra")
Loading required package: RColorBrewer
Loading required package: lattice
Error in gzfile(file, "rb") : cannot open the connection
In addition: Warning messages:
1: '.find.package' is deprecated.
Use 'find.package' instead.
See help("Deprecated") 
2: In gzfile(file, "rb") :
  cannot open compressed file '/Library/Frameworks/R.framework/Versions/3.0/Resources/library/latticeExtra/data/Rdata.rdx', probable reason 'No such file or directory'
Error: package or namespace load failed for ‘latticeExtra’

Thanks for your response Steve.  Ideas?

Don


On Mar 24, 2014, at 1:13 PM, Steven McKinney <smckinney at bccrc.ca> wrote:

> The complaint is about a component in package latticeExtra.
> 
> Do you have this package installed?
> 
> (latticExtra does not show as required when I load Hmisc
> 
>> require("Hmisc")
> Loading required package: Hmisc
> Loading required package: grid
> Loading required package: lattice
> Loading required package: survival
> Loading required package: splines
> Loading required package: Formula
> 
> but I do see latticeExtra in my installed library directory
> 
>  /Library/Frameworks/R.framework/Versions/Current/Resources/library )
> 
> 
> 
> 
> Steven McKinney
> 
> Statistician
> Molecular Oncology and Breast Cancer Program
> British Columbia Cancer Research Centre
> 
> ________________________________________
> From: r-sig-mac-bounces at r-project.org [r-sig-mac-bounces at r-project.org] On Behalf Of Don McKenzie [dmck at u.washington.edu]
> Sent: March 24, 2014 12:35 PM
> To: r-sig-mac at r-project.org
> Subject: [R-SIG-Mac] [R-sig-mac] Hmisc installed but won't load
> 
> My apologies if this has been addressed recently. Searching the archive and google brought me only to older posts.
> 
> I’m not understanding the error message below when I try to load Hmisc. I reinstalled it using the syntax suggested by Simon in an earlier post. I am using the vanilla R GUI ("R 3.0.3 GUI 1.63 Snow Leopard build (6660)”) on OSX 10.9.2.
> 
> Thanks in advance.
> 
> 
>> install.packages("Hmisc",,"http://cran.r-project.org")
> trying URL 'http://cran.r-project.org/bin/macosx/contrib/3.0/Hmisc_3.14-3.tgz'
> Content type 'application/x-gzip' length 1555868 bytes (1.5 Mb)
> opened URL
> ==================================================
> downloaded 1.5 Mb
> 
> The downloaded binary packages are in
>        /var/folders/d1/r1hsc_s91pg18v_t23bq27tw0000gn/T//RtmpIPxtRG/downloaded_packages
> 
> 
> 
>> library("Hmisc")
> Error in gzfile(file, "rb") : cannot open the connection     *****************
> In addition: Warning message:
> In gzfile(file, "rb") :
>  cannot open compressed file '/Library/Frameworks/R.framework/Versions/3.0/Resources/library/latticeExtra/data/Rdata.rdx', probable reason 'No such file or directory'
> Error: package or namespace load failed for ‘Hmisc’
> 
> 
> 
>> installed.packages()
> .
> .
> .
> Hmisc         "Hmisc"         "/Library/Frameworks/R.framework/Versions/3.0/Resources/library" "3.14-3”     NA
> .
> .
> .
> 
> 
>> sessionInfo()
> R version 3.0.3 (2014-03-06)
> Platform: x86_64-apple-darwin10.8.0 (64-bit)
> 
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> 
> attached base packages:
> [1] splines   grid      stats     graphics  grDevices utils     datasets  methods   base
> 
> other attached packages:
> [1] Formula_1.1-1   survival_2.37-7 lattice_0.20-27 lavaan_0.5-15   MASS_7.3-29     plspm_0.4.1     turner_0.1.7    tester_0.1.7    diagram_1.6.2   shape_1.4.1     amap_0.8-12
> 
> loaded via a namespace (and not attached):
> [1] mnormt_1.4-7       pbivnorm_0.5-1     quadprog_1.5-5     RColorBrewer_1.0-5 stats4_3.0.3       tools_3.0.3
> 
> 
> 
> 
> Don McKenzie
> Research Ecologist
> Pacific Wildland Fire Sciences Lab
> US Forest Service
> 
> Affiliate Professor
> School of Environmental and Forest Sciences
> University of Washington
> dmck at uw.edu
> 
> _______________________________________________
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> R-SIG-Mac at r-project.org
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Don McKenzie
Research Ecologist
Pacific Wildland Fire Sciences Lab
US Forest Service

Affiliate Professor
School of Environmental and Forest Sciences
University of Washington
dmck at uw.edu