[R-SIG-Mac] Problems with R 1.

[Simon Urbanek]

On Apr 11, 2014, at 6:33 PM, Jorge Franco <jfranco at fagro.edu.uy> wrote:

> I am an old R beginner, to day installed R 3.1.0 mavericks and am having troubles (the R -d lldb example below worked for me).

Can you send me the output then?


> Do you think we need simply wait for the packages actualization (like
> lsmeans, by example)?
> Could we do other actions?

Well, unless we find out what's going on, updates won't help since there is nothing to change.

Are you saying you hit the same problem as Patrick?

Thanks,
Simon



> Thank you very much
> J Franco
> 
> Jorge Franco 
> Director, Departamento de Biometria y Estadística
> Facultad de Agronomia
> Universidad de la Republica
> Est. Exp. EEMAC, Ruta 3, Km 363
> Paysandu
> Uruguay
> 
> 
> 
> 
> 
> On 4/11/14, 4:28 PM, "Simon Urbanek" <simon.urbanek at r-project.org> wrote:
> 
>> Patrick,
>> 
>> could it be that you have older versions of packages installed that were
>> not built for Mavericks? Please check .libPaths() to make sure.
>> 
>> I cannot reproduce the issue, so please provide the output of
>> sessionInfo() and if you have Xcode 5 installed, please run
>> 
>> R -d lldb
>> 
>> then let it crash and type
>> bt
>> on the prompt and send us the output.
>> 
>> If you don't have Xcode5 or the above doesn't work, please select option
>> 1 (abort) in the crash menu and check if you find a crash report.
>> 
>> Thanks,
>> Simon
>> 
>> 
>> On Apr 11, 2014, at 2:58 PM, PatrickT <annoporci at gmail.com> wrote:
>> 
>>> First, sorry if this is a repeat: I just joined the list and don't know
>>> what has been discussed recently. Thanks for listening!
>>> 
>>> I just installed the latest version of R (3.1.0).  I also reinstalled
>>> the
>>> ggplot2 package. As soon as I execute library("ggplot2") I get the bomb
>>> message "R Session Aborted" (in RStudio) or "caught segfault" message
>>> (in
>>> the R Console).
>>> 
>>> I'm on Mac OS X Mavericks. I downloaded the Mavericks version, which is
>>> specifically designed for the new XCode (or something).
>>> 
>>> I haven't tried on my Linux because I want to keep at least one working
>>> version of R/RStudio.
>>> 
>>> I tried to look at the log files here:
>>> Help Menu -> Diagnostics -> Show Log Files
>>> 
>>> but they are from last week, which is odd because I use R/RStudio every
>>> day.
>>> 
>>> In the R Console:
>>> library("ggplot2")
>>> 
>>> *** caught segfault ***
>>> address 0x18, cause 'memory not mapped'
>>> 
>>> Traceback:
>>> 1: dyn.load(file, DLLpath = DLLpath, ...)
>>> 2: library.dynam(lib, package, package.lib)
>>> 3: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck =
>>> vI[[j]])
>>> 4: asNamespace(ns)
>>> 5: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
>>> .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
>>> 6: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
>>> 7: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()),
>>> versionCheck = vI[[i]]), from = package)
>>> 8: loadNamespace(package, c(which.lib.loc, lib.loc))
>>> 9: doTryCatch(return(expr), name, parentenv, handler)
>>> 10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
>>> 11: tryCatchList(expr, classes, parentenv, handlers)
>>> 12: tryCatch(expr, error = function(e) {    call <- conditionCall(e)
>>> if
>>> (!is.null(call)) {        if (identical(call[[1L]],
>>> quote(doTryCatch)))             call <- sys.call(-4L)        dcall <-
>>> deparse(call)[1L]        prefix <- paste("Error in", dcall, ": ")
>>> LONG <- 75L        msg <- conditionMessage(e)        sm <- strsplit(msg,
>>> "\n")[[1L]]        w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L],
>>> type
>>> = "w")        if (is.na(w))             w <- 14L + nchar(dcall, type =
>>> "b")
>>> + nchar(sm[1L],                 type = "b")        if (w >
>>> LONG)             prefix <- paste0(prefix, "\n  ")    }    else prefix
>>> <-
>>> "Error : "    msg <- paste0(prefix, conditionMessage(e), "\n")
>>> .Internal(seterrmessage(msg[1L]))    if (!silent &&
>>> identical(getOption("show.error.messages"),         TRUE)) {
>>> cat(msg, file = stderr())        .Internal(printDeferredWarnings())    }
>>> invisible(structure(msg, class = "try-error", condition = e))})
>>> 13: try({    ns <- loadNamespace(package, c(which.lib.loc, lib.loc))
>>> env
>>> <- attachNamespace(ns, pos = pos, deps)})
>>> 14: library("ggplot2")
>>> 
>>> Possible actions:
>>> 1: abort (with core dump, if enabled)
>>> 2: normal R exit
>>> 3: exit R without saving workspace
>>> 4: exit R saving workspace
>>> Selection:
>>> 
>>> 	[[alternative HTML version deleted]]
>>> 
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>> 
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