[R-SIG-Mac] Problems with R 1.

[Jorge Franco]

I am an old R beginner, to day installed R 3.1.0 mavericks and am having
troubles (the R -d lldb example below worked for me).
Do you think we need simply wait for the packages actualization (like
lsmeans, by example)?
Could we do other actions?
Thank you very much
J Franco

Jorge Franco 
Director, Departamento de Biometria y Estadística
Facultad de Agronomia
Universidad de la Republica
Est. Exp. EEMAC, Ruta 3, Km 363
Paysandu
Uruguay





On 4/11/14, 4:28 PM, "Simon Urbanek" <simon.urbanek at r-project.org> wrote:

>Patrick,
>
>could it be that you have older versions of packages installed that were
>not built for Mavericks? Please check .libPaths() to make sure.
>
>I cannot reproduce the issue, so please provide the output of
>sessionInfo() and if you have Xcode 5 installed, please run
>
>R -d lldb
>
>then let it crash and type
>bt
>on the prompt and send us the output.
>
>If you don't have Xcode5 or the above doesn't work, please select option
>1 (abort) in the crash menu and check if you find a crash report.
>
>Thanks,
>Simon
>
>
>On Apr 11, 2014, at 2:58 PM, PatrickT <annoporci at gmail.com> wrote:
>
>> First, sorry if this is a repeat: I just joined the list and don't know
>> what has been discussed recently. Thanks for listening!
>> 
>> I just installed the latest version of R (3.1.0).  I also reinstalled
>>the
>> ggplot2 package. As soon as I execute library("ggplot2") I get the bomb
>> message "R Session Aborted" (in RStudio) or "caught segfault" message
>>(in
>> the R Console).
>> 
>> I'm on Mac OS X Mavericks. I downloaded the Mavericks version, which is
>> specifically designed for the new XCode (or something).
>> 
>> I haven't tried on my Linux because I want to keep at least one working
>> version of R/RStudio.
>> 
>> I tried to look at the log files here:
>> Help Menu -> Diagnostics -> Show Log Files
>> 
>> but they are from last week, which is odd because I use R/RStudio every
>>day.
>> 
>> In the R Console:
>> library("ggplot2")
>> 
>> *** caught segfault ***
>> address 0x18, cause 'memory not mapped'
>> 
>> Traceback:
>> 1: dyn.load(file, DLLpath = DLLpath, ...)
>> 2: library.dynam(lib, package, package.lib)
>> 3: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck =
>> vI[[j]])
>> 4: asNamespace(ns)
>> 5: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
>> .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
>> 6: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
>> 7: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()),
>> versionCheck = vI[[i]]), from = package)
>> 8: loadNamespace(package, c(which.lib.loc, lib.loc))
>> 9: doTryCatch(return(expr), name, parentenv, handler)
>> 10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
>> 11: tryCatchList(expr, classes, parentenv, handlers)
>> 12: tryCatch(expr, error = function(e) {    call <- conditionCall(e)
>>if
>> (!is.null(call)) {        if (identical(call[[1L]],
>> quote(doTryCatch)))             call <- sys.call(-4L)        dcall <-
>> deparse(call)[1L]        prefix <- paste("Error in", dcall, ": ")
>> LONG <- 75L        msg <- conditionMessage(e)        sm <- strsplit(msg,
>> "\n")[[1L]]        w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L],
>>type
>> = "w")        if (is.na(w))             w <- 14L + nchar(dcall, type =
>>"b")
>> + nchar(sm[1L],                 type = "b")        if (w >
>> LONG)             prefix <- paste0(prefix, "\n  ")    }    else prefix
>><-
>> "Error : "    msg <- paste0(prefix, conditionMessage(e), "\n")
>> .Internal(seterrmessage(msg[1L]))    if (!silent &&
>> identical(getOption("show.error.messages"),         TRUE)) {
>> cat(msg, file = stderr())        .Internal(printDeferredWarnings())    }
>> invisible(structure(msg, class = "try-error", condition = e))})
>> 13: try({    ns <- loadNamespace(package, c(which.lib.loc, lib.loc))
>>env
>> <- attachNamespace(ns, pos = pos, deps)})
>> 14: library("ggplot2")
>> 
>> Possible actions:
>> 1: abort (with core dump, if enabled)
>> 2: normal R exit
>> 3: exit R without saving workspace
>> 4: exit R saving workspace
>> Selection:
>> 
>> 	[[alternative HTML version deleted]]
>> 
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>> 
>
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