[R-SIG-Mac] Problems with R 1.

[Jorge Franco]

The terminal output is attached (it did not crash).
No, I have different problems (simpler than Patrick problems, surely).
Following your suggestion "there is nothing to change" I did get the
packages I need by downloading the .tar files (from the CRAN-R-project)
and installing them using Rstudio. For now that's working.
Thanks very much,
J Franco



On 4/11/14, 11:34 PM, "Simon Urbanek" <simon.urbanek at r-project.org> wrote:

>On Apr 11, 2014, at 6:33 PM, Jorge Franco <jfranco at fagro.edu.uy> wrote:
>
>> I am an old R beginner, to day installed R 3.1.0 mavericks and am
>>having troubles (the R -d lldb example below worked for me).
>
>Can you send me the output then?
>
>
>> Do you think we need simply wait for the packages actualization (like
>> lsmeans, by example)?
>> Could we do other actions?
>
>Well, unless we find out what's going on, updates won't help since there
>is nothing to change.
>
>Are you saying you hit the same problem as Patrick?
>
>Thanks,
>Simon
>
>
>
>> Thank you very much
>> J Franco
>> 
>> Jorge Franco 
>> Director, Departamento de Biometria y Estadística
>> Facultad de Agronomia
>> Universidad de la Republica
>> Est. Exp. EEMAC, Ruta 3, Km 363
>> Paysandu
>> Uruguay
>> 
>> 
>> 
>> 
>> 
>> On 4/11/14, 4:28 PM, "Simon Urbanek" <simon.urbanek at r-project.org>
>>wrote:
>> 
>>> Patrick,
>>> 
>>> could it be that you have older versions of packages installed that
>>>were
>>> not built for Mavericks? Please check .libPaths() to make sure.
>>> 
>>> I cannot reproduce the issue, so please provide the output of
>>> sessionInfo() and if you have Xcode 5 installed, please run

>>>then let it crash and type
>>> bt
>>> on the prompt and send us the output.
>>> 
>>> If you don't have Xcode5 or the above doesn't work, please select
>>>option
>>> 1 (abort) in the crash menu and check if you find a crash report.
>>> 
>>> Thanks,
>>> Simon
>>> 
>>> 
>>> On Apr 11, 2014, at 2:58 PM, PatrickT <annoporci at gmail.com> wrote:
>>> 
>>>> First, sorry if this is a repeat: I just joined the list and don't
>>>>know
>>>> what has been discussed recently. Thanks for listening!
>>>> 
>>>> I just installed the latest version of R (3.1.0).  I also reinstalled
>>>> the
>>>> ggplot2 package. As soon as I execute library("ggplot2") I get the
>>>>bomb
>>>> message "R Session Aborted" (in RStudio) or "caught segfault" message
>>>> (in
>>>> the R Console).
>>>> 
>>>> I'm on Mac OS X Mavericks. I downloaded the Mavericks version, which
>>>>is
>>>> specifically designed for the new XCode (or something).
>>>> 
>>>> I haven't tried on my Linux because I want to keep at least one
>>>>working
>>>> version of R/RStudio.
>>>> 
>>>> I tried to look at the log files here:
>>>> Help Menu -> Diagnostics -> Show Log Files
>>>> 
>>>> but they are from last week, which is odd because I use R/RStudio
>>>>every
>>>> day.
>>>> 
>>>> In the R Console:
>>>> library("ggplot2")
>>>> 
>>>> *** caught segfault ***
>>>> address 0x18, cause 'memory not mapped'
>>>> 
>>>> Traceback:
>>>> 1: dyn.load(file, DLLpath = DLLpath, ...)
>>>> 2: library.dynam(lib, package, package.lib)
>>>> 3: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck =
>>>> vI[[j]])
>>>> 4: asNamespace(ns)
>>>> 5: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
>>>> .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
>>>> 6: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
>>>> 7: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()),
>>>> versionCheck = vI[[i]]), from = package)
>>>> 8: loadNamespace(package, c(which.lib.loc, lib.loc))
>>>> 9: doTryCatch(return(expr), name, parentenv, handler)
>>>> 10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
>>>> 11: tryCatchList(expr, classes, parentenv, handlers)
>>>> 12: tryCatch(expr, error = function(e) {    call <- conditionCall(e)
>>>> if
>>>> (!is.null(call)) {        if (identical(call[[1L]],
>>>> quote(doTryCatch)))             call <- sys.call(-4L)        dcall <-
>>>> deparse(call)[1L]        prefix <- paste("Error in", dcall, ": ")
>>>> LONG <- 75L        msg <- conditionMessage(e)        sm <-
>>>>strsplit(msg,
>>>> "\n")[[1L]]        w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L],
>>>> type
>>>> = "w")        if (is.na(w))             w <- 14L + nchar(dcall, type =
>>>> "b")
>>>> + nchar(sm[1L],                 type = "b")        if (w >
>>>> LONG)             prefix <- paste0(prefix, "\n  ")    }    else prefix
>>>> <-
>>>> "Error : "    msg <- paste0(prefix, conditionMessage(e), "\n")
>>>> .Internal(seterrmessage(msg[1L]))    if (!silent &&
>>>> identical(getOption("show.error.messages"),         TRUE)) {
>>>> cat(msg, file = stderr())        .Internal(printDeferredWarnings())
>>>> }
>>>> invisible(structure(msg, class = "try-error", condition = e))})
>>>> 13: try({    ns <- loadNamespace(package, c(which.lib.loc, lib.loc))
>>>> env
>>>> <- attachNamespace(ns, pos = pos, deps)})
>>>> 14: library("ggplot2")
>>>> 
>>>> Possible actions:
>>>> 1: abort (with core dump, if enabled)
>>>> 2: normal R exit
>>>> 3: exit R without saving workspace
>>>> 4: exit R saving workspace
>>>> Selection:
>>>> 
>>>> 	[[alternative HTML version deleted]]
>>>> 
>>>> _______________________________________________
>>>> R-SIG-Mac mailing list
>>>> R-SIG-Mac at r-project.org
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>>>> 
>>> 
>>> _______________________________________________
>>> R-SIG-Mac mailing list
>>> R-SIG-Mac at r-project.org
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>> 
>> 
>

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