[R-SIG-Mac] LogicReg package problems

[Kasper Daniel Hansen]

Ok, I was wondering if you were picking up the same gfortran at run
and compile time.  I see the error on the cran building machine, so it
is probably an issue at the package level.

I suggest emailing the two authors about it.  I know for sure Ingo is
using a Mac as a laptop, so perhaps he has something insightful to say
about this.

Kasper

On Mon, Jan 16, 2012 at 9:31 AM, BEES INC <bees.inc at gmail.com> wrote:
> I should add, it is the same version of gfortran that R is expecting,
> just installed in a different location
>
> On Tue, Jan 17, 2012 at 1:25 AM, BEES INC <bees.inc at gmail.com> wrote:
>> I do not believe gfortran comes with OS X, so I installed the latest
>> version. R was picking up a version that had been installed with
>> octave, which is why I needed to make some changes as I did not want
>> to link R libs with something packaged with octave (because if i
>> update or remove octave all my R libs will break).
>>
>> I don't think that is a material part of the issue, and doing some
>> digging I see it is not just my machine:
>>
>> http://cran.r-project.org/web/checks/check_results_LogicReg.html
>> http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/LogicReg-00install.html
>>
>> Which shows the same error. Can you build the package OK?
>>
>> Thanks
>>
>> On Tue, Jan 17, 2012 at 1:16 AM, Kasper Daniel Hansen
>> <kasperdanielhansen at gmail.com> wrote:
>>> On Mon, Jan 16, 2012 at 2:57 AM, BEES INC <bees.inc at gmail.com> wrote:
>>>> Hey there
>>>>
>>>> I am having a bit of trouble getting this working, I had to do a bit
>>>> of fiddling with makefiles to get it to find the right gfortran, but
>>>> it builds & links without error, however the install gives the
>>>> following error:
>>>
>>> You have used some special (?) gfortran at compile time (based on the
>>> above, but I am not sure).  This may not work with R that has been
>>> compiled with another gfortran and it might also not work at run time.
>>>
>>> We really need more information about exactly what you have done.
>>>
>>> Kasper
>>>
>>>
>>>>
>>>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>>>  unable to load shared object
>>>> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so':
>>>>  dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so,
>>>> 6): no suitable image found.  Did find:
>>>>        /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so:
>>>> out of address space
>>>>
>>>> Full install is as follows:
>>>>
>>>> $ R CMD INSTALL --no-multiarch LogicReg_1.4.11.tar.gz
>>>> * installing to library
>>>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library’
>>>> * installing *source* package ‘LogicReg’ ...
>>>> ** package ‘LogicReg’ successfully unpacked and MD5 sums checked
>>>> ** Creating default NAMESPACE file
>>>> ** libs
>>>> *** arch - i386
>>>> gfortran   -fPIC  -g -O2 -c My_own_scoring.f -o My_own_scoring.o
>>>> gfortran   -fPIC  -g -O2 -c external.f -o external.o
>>>> gfortran   -fPIC  -g -O2 -c slogic.f -o slogic.o
>>>> gcc-4.2 -arch i386 -std=gnu99
>>>> -I/Library/Frameworks/R.framework/Resources/include
>>>> -I/Library/Frameworks/R.framework/Resources/include/i386
>>>> -I/usr/local/include    -fPIC  -g -O2 -c swrite.c -o swrite.o
>>>> gcc-4.2 -arch i386 -std=gnu99 -dynamiclib
>>>> -Wl,-headerpad_max_install_names -single_module -multiply_defined
>>>> suppress -L/usr/local/lib
>>>> -L/usr/local/gfortran/lib/gcc/i686-apple-darwin9/4.6.2 -o LogicReg.so
>>>> My_own_scoring.o external.o slogic.o swrite.o -lgfortran
>>>> -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
>>>> -Wl,CoreFoundation
>>>> installing to /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386
>>>> ** R
>>>> ** data
>>>> ** inst
>>>> ** preparing package for lazy loading
>>>> ** help
>>>> *** installing help indices
>>>> ** building package indices ...
>>>> ** testing if installed package can be loaded
>>>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>>>  unable to load shared object
>>>> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so':
>>>>  dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so,
>>>> 6): no suitable image found.  Did find:
>>>>        /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so:
>>>> out of address space
>>>> Error: loading failed
>>>> Execution halted
>>>> ERROR: loading failed
>>>> * removing ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg’
>>>> $
>>>>
>>>> Any ideas?
>>>>
>>>> Thanks
>>>>
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