[R-SIG-Mac] LogicReg package problems

[BEES INC]

I should add, it is the same version of gfortran that R is expecting,
just installed in a different location

On Tue, Jan 17, 2012 at 1:25 AM, BEES INC <bees.inc at gmail.com> wrote:
> I do not believe gfortran comes with OS X, so I installed the latest
> version. R was picking up a version that had been installed with
> octave, which is why I needed to make some changes as I did not want
> to link R libs with something packaged with octave (because if i
> update or remove octave all my R libs will break).
>
> I don't think that is a material part of the issue, and doing some
> digging I see it is not just my machine:
>
> http://cran.r-project.org/web/checks/check_results_LogicReg.html
> http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/LogicReg-00install.html
>
> Which shows the same error. Can you build the package OK?
>
> Thanks
>
> On Tue, Jan 17, 2012 at 1:16 AM, Kasper Daniel Hansen
> <kasperdanielhansen at gmail.com> wrote:
>> On Mon, Jan 16, 2012 at 2:57 AM, BEES INC <bees.inc at gmail.com> wrote:
>>> Hey there
>>>
>>> I am having a bit of trouble getting this working, I had to do a bit
>>> of fiddling with makefiles to get it to find the right gfortran, but
>>> it builds & links without error, however the install gives the
>>> following error:
>>
>> You have used some special (?) gfortran at compile time (based on the
>> above, but I am not sure).  This may not work with R that has been
>> compiled with another gfortran and it might also not work at run time.
>>
>> We really need more information about exactly what you have done.
>>
>> Kasper
>>
>>
>>>
>>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>>  unable to load shared object
>>> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so':
>>>  dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so,
>>> 6): no suitable image found.  Did find:
>>>        /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so:
>>> out of address space
>>>
>>> Full install is as follows:
>>>
>>> $ R CMD INSTALL --no-multiarch LogicReg_1.4.11.tar.gz
>>> * installing to library
>>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library’
>>> * installing *source* package ‘LogicReg’ ...
>>> ** package ‘LogicReg’ successfully unpacked and MD5 sums checked
>>> ** Creating default NAMESPACE file
>>> ** libs
>>> *** arch - i386
>>> gfortran   -fPIC  -g -O2 -c My_own_scoring.f -o My_own_scoring.o
>>> gfortran   -fPIC  -g -O2 -c external.f -o external.o
>>> gfortran   -fPIC  -g -O2 -c slogic.f -o slogic.o
>>> gcc-4.2 -arch i386 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/i386
>>> -I/usr/local/include    -fPIC  -g -O2 -c swrite.c -o swrite.o
>>> gcc-4.2 -arch i386 -std=gnu99 -dynamiclib
>>> -Wl,-headerpad_max_install_names -single_module -multiply_defined
>>> suppress -L/usr/local/lib
>>> -L/usr/local/gfortran/lib/gcc/i686-apple-darwin9/4.6.2 -o LogicReg.so
>>> My_own_scoring.o external.o slogic.o swrite.o -lgfortran
>>> -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
>>> -Wl,CoreFoundation
>>> installing to /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386
>>> ** R
>>> ** data
>>> ** inst
>>> ** preparing package for lazy loading
>>> ** help
>>> *** installing help indices
>>> ** building package indices ...
>>> ** testing if installed package can be loaded
>>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>>  unable to load shared object
>>> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so':
>>>  dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so,
>>> 6): no suitable image found.  Did find:
>>>        /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so:
>>> out of address space
>>> Error: loading failed
>>> Execution halted
>>> ERROR: loading failed
>>> * removing ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg’
>>> $
>>>
>>> Any ideas?
>>>
>>> Thanks
>>>
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