[R-SIG-Mac] LogicReg package problems

[BEES INC]

I do not believe gfortran comes with OS X, so I installed the latest
version. R was picking up a version that had been installed with
octave, which is why I needed to make some changes as I did not want
to link R libs with something packaged with octave (because if i
update or remove octave all my R libs will break).

I don't think that is a material part of the issue, and doing some
digging I see it is not just my machine:

http://cran.r-project.org/web/checks/check_results_LogicReg.html
http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/LogicReg-00install.html

Which shows the same error. Can you build the package OK?

Thanks

On Tue, Jan 17, 2012 at 1:16 AM, Kasper Daniel Hansen
<kasperdanielhansen at gmail.com> wrote:
> On Mon, Jan 16, 2012 at 2:57 AM, BEES INC <bees.inc at gmail.com> wrote:
>> Hey there
>>
>> I am having a bit of trouble getting this working, I had to do a bit
>> of fiddling with makefiles to get it to find the right gfortran, but
>> it builds & links without error, however the install gives the
>> following error:
>
> You have used some special (?) gfortran at compile time (based on the
> above, but I am not sure).  This may not work with R that has been
> compiled with another gfortran and it might also not work at run time.
>
> We really need more information about exactly what you have done.
>
> Kasper
>
>
>>
>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>  unable to load shared object
>> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so':
>>  dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so,
>> 6): no suitable image found.  Did find:
>>        /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so:
>> out of address space
>>
>> Full install is as follows:
>>
>> $ R CMD INSTALL --no-multiarch LogicReg_1.4.11.tar.gz
>> * installing to library
>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library’
>> * installing *source* package ‘LogicReg’ ...
>> ** package ‘LogicReg’ successfully unpacked and MD5 sums checked
>> ** Creating default NAMESPACE file
>> ** libs
>> *** arch - i386
>> gfortran   -fPIC  -g -O2 -c My_own_scoring.f -o My_own_scoring.o
>> gfortran   -fPIC  -g -O2 -c external.f -o external.o
>> gfortran   -fPIC  -g -O2 -c slogic.f -o slogic.o
>> gcc-4.2 -arch i386 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/i386
>> -I/usr/local/include    -fPIC  -g -O2 -c swrite.c -o swrite.o
>> gcc-4.2 -arch i386 -std=gnu99 -dynamiclib
>> -Wl,-headerpad_max_install_names -single_module -multiply_defined
>> suppress -L/usr/local/lib
>> -L/usr/local/gfortran/lib/gcc/i686-apple-darwin9/4.6.2 -o LogicReg.so
>> My_own_scoring.o external.o slogic.o swrite.o -lgfortran
>> -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
>> -Wl,CoreFoundation
>> installing to /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386
>> ** R
>> ** data
>> ** inst
>> ** preparing package for lazy loading
>> ** help
>> *** installing help indices
>> ** building package indices ...
>> ** testing if installed package can be loaded
>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>  unable to load shared object
>> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so':
>>  dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so,
>> 6): no suitable image found.  Did find:
>>        /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so:
>> out of address space
>> Error: loading failed
>> Execution halted
>> ERROR: loading failed
>> * removing ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg’
>> $
>>
>> Any ideas?
>>
>> Thanks
>>
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