[R-SIG-Mac] LogicReg package problems

Prof Brian Ripley ripley at stats.ox.ac.uk
Mon Jan 16 16:24:30 CET 2012 

What precise OS and which architecture is this (see the posting guide)?

AFAIK LogicReg will install on x86_64 on a Mac (nowadays the default for 
most people) but not the 32-bit architectures.

It predefines some very large arrays: try reducing LGCn1MAX (twice) in 
slogic.f .  It then works for me (I tried 10000).

And if this works for you, please report to the package maintainer.


On 16/01/2012 14:31, BEES INC wrote:
> I should add, it is the same version of gfortran that R is expecting,
> just installed in a different location
>
> On Tue, Jan 17, 2012 at 1:25 AM, BEES INC<bees.inc at gmail.com>  wrote:
>> I do not believe gfortran comes with OS X, so I installed the latest
>> version. R was picking up a version that had been installed with
>> octave, which is why I needed to make some changes as I did not want
>> to link R libs with something packaged with octave (because if i
>> update or remove octave all my R libs will break).
>>
>> I don't think that is a material part of the issue, and doing some
>> digging I see it is not just my machine:
>>
>> http://cran.r-project.org/web/checks/check_results_LogicReg.html
>> http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/LogicReg-00install.html
>>
>> Which shows the same error. Can you build the package OK?
>>
>> Thanks
>>
>> On Tue, Jan 17, 2012 at 1:16 AM, Kasper Daniel Hansen
>> <kasperdanielhansen at gmail.com>  wrote:
>>> On Mon, Jan 16, 2012 at 2:57 AM, BEES INC<bees.inc at gmail.com>  wrote:
>>>> Hey there
>>>>
>>>> I am having a bit of trouble getting this working, I had to do a bit
>>>> of fiddling with makefiles to get it to find the right gfortran, but
>>>> it builds&  links without error, however the install gives the
>>>> following error:
>>>
>>> You have used some special (?) gfortran at compile time (based on the
>>> above, but I am not sure).  This may not work with R that has been
>>> compiled with another gfortran and it might also not work at run time.
>>>
>>> We really need more information about exactly what you have done.
>>>
>>> Kasper
>>>
>>>
>>>>
>>>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>>>   unable to load shared object
>>>> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so':
>>>>   dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so,
>>>> 6): no suitable image found.  Did find:
>>>>         /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so:
>>>> out of address space
>>>>
>>>> Full install is as follows:
>>>>
>>>> $ R CMD INSTALL --no-multiarch LogicReg_1.4.11.tar.gz
>>>> * installing to library
>>>> ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library’
>>>> * installing *source* package ‘LogicReg’ ...
>>>> ** package ‘LogicReg’ successfully unpacked and MD5 sums checked
>>>> ** Creating default NAMESPACE file
>>>> ** libs
>>>> *** arch - i386
>>>> gfortran   -fPIC  -g -O2 -c My_own_scoring.f -o My_own_scoring.o
>>>> gfortran   -fPIC  -g -O2 -c external.f -o external.o
>>>> gfortran   -fPIC  -g -O2 -c slogic.f -o slogic.o
>>>> gcc-4.2 -arch i386 -std=gnu99
>>>> -I/Library/Frameworks/R.framework/Resources/include
>>>> -I/Library/Frameworks/R.framework/Resources/include/i386
>>>> -I/usr/local/include    -fPIC  -g -O2 -c swrite.c -o swrite.o
>>>> gcc-4.2 -arch i386 -std=gnu99 -dynamiclib
>>>> -Wl,-headerpad_max_install_names -single_module -multiply_defined
>>>> suppress -L/usr/local/lib
>>>> -L/usr/local/gfortran/lib/gcc/i686-apple-darwin9/4.6.2 -o LogicReg.so
>>>> My_own_scoring.o external.o slogic.o swrite.o -lgfortran
>>>> -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
>>>> -Wl,CoreFoundation
>>>> installing to /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386
>>>> ** R
>>>> ** data
>>>> ** inst
>>>> ** preparing package for lazy loading
>>>> ** help
>>>> *** installing help indices
>>>> ** building package indices ...
>>>> ** testing if installed package can be loaded
>>>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>>>   unable to load shared object
>>>> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so':
>>>>   dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so,
>>>> 6): no suitable image found.  Did find:
>>>>         /Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg/libs/i386/LogicReg.so:
>>>> out of address space
>>>> Error: loading failed
>>>> Execution halted
>>>> ERROR: loading failed
>>>> * removing ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library/LogicReg’
>>>> $
>>>>
>>>> Any ideas?
>>>>
>>>> Thanks
>>>>
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>
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-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595

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