[R-SIG-Mac] XML pachage on mac osx leopard

Simon Urbanek simon.urbanek at r-project.org
Mon Jun 15 04:42:03 CEST 2009 

On Jun 14, 2009, at 7:19 PM, Massimo Di Stefano wrote:

> I moved ttemporary the xml2-config :
>
> sudo mv /usr/bin/xml2-config /usr/bin/xml2-config.back
>
> then done a simlink :
>
> sudo ln -s /usr/local/bin/ml2-config /usr/bin/
>

eek ... why don't you just set
export PATH=/usr/local/bin:$PATH
temporarily before installing instead?

Cheers,
S

[BTW: recent versions of XML are so often broken that I gave up on  
following it...]


> then i succesfull installed the needed packages (spgrass6)
>
> ... now i ripristinate the system libxml2
>
> i hope the package will work  :-/
>
> ... or ripristinate the system libxml will broke the xml pamackage  
> in R ?
>
>
> any code strip to see if it continue to works as aspected ?
>
> thanks !!!
>
> Massimo Di Stefano
>
>
> p.s.
>
> how to change in R  the order of searching path ?
> in usr local i've some libraries installed from source
> that maybe are newer vdersion that the system version
> ...
> i've some unix stuff installed in my framework too (gdal, jpeg,  
> libtiff and others)
> to install rgdal im using :  --with-configure-args option  in the R  
> CMD install command
> ...
> it is possible to add frameworks to the R search-lib path ?
>
> Il giorno 14/giu/09, alle ore 23:58, Prof Brian Ripley ha scritto:
>
>> Which version of package XML is this?  For 2.5.0 at least, you need  
>> a more recent version of libxml2 (as the log you show does warn you).
>>
>> The CRAN install log at
>>
>> http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/XML-00install.html
>>
>> shows the same problem for XML 2.5.1.
>>
>>> i also tried to install :
>>>
>>> libxml2-sources-2.7.3
>>>
>>> using no specific option in configure, just  : ./configure make make
>> install
>>> (in usr/local) but the log seems to not changes.
>>
>> Ah, but note you have
>>
>>> checking for xml2-config... /usr/bin/xml2-config
>>
>> Is /usr/bin ahead of /usr/local/bin in your path?  I needed to  
>> change the path order.
>>
>> Alternatively, XML 2.3.0 should work, and there is a binary on  
>> CRAN. (But some other Omegahat packages seem to need XML >= 2.5.0  
>> without saying so: one is XMLschema on which SSOAP depends. OTOH,  
>> quite a few other packages are unhappy with XML 2.5.x.)
>>
>>
>> On Sun, 14 Jun 2009, Massimo Di Stefano wrote:
>>
>>> Hi All,
>>>
>>> i'm tring to install XML pachage on osx leopard but the build  
>>> fails with this log :
>>>
>>> * Installing *source* package ‘XML’ ...
>>> checking for gcc... gcc
>>> checking for C compiler default output file name... a.out
>>> checking whether the C compiler works... yes
>>> checking whether we are cross compiling... no
>>> checking for suffix of executables...
>>> checking for suffix of object files... o
>>> checking whether we are using the GNU C compiler... yes
>>> checking whether gcc accepts -g... yes
>>> checking for gcc option to accept ISO C89... none needed
>>> checking how to run the C preprocessor... gcc -E
>>> checking for sed... /usr/bin/sed
>>> checking for pkg-config... no
>>> checking for xml2-config... /usr/bin/xml2-config
>>> USE_XML2 = yes
>>> SED_EXTENDED_ARG: -E
>>> Minor 6, Patch 16 for 2.6.16
>>> Located parser file -I/usr/include/libxml2/parser.h
>>> Checking for 1.8:  -I/usr/include/libxml2
>>> Using libxml2.*
>>> checking for gzopen in -lz... yes
>>> checking for xmlParseFile in -lxml2... yes
>>> checking for xmlHashSize in -lxml2... yes
>>> Using built-in xmlHashSize
>>> Checking DTD parsing (presence of externalSubset)...
>>> checking for xmlHashSize in -lxml2... yes
>>> Found xmlHashSize
>>> checking for xmlOutputBufferCreateBuffer in -lxml2... no
>>> Using local xmlOutputBufferCreateBuffer.  You might think about  
>>> installing a newer version of libxml2, at least 2.6.23
>>> checking for xmlDocDumpFormatMemoryEnc in -lxml2... yes
>>> checking libxml/xmlversion.h usability... yes
>>> checking libxml/xmlversion.h presence... yes
>>> checking for libxml/xmlversion.h... yes
>>> Expat:  FALSE
>>> Checking for return type of xmlHashScan element routine.
>>> No return value for xmlHashScan
>>> No context field in xmlNs structure.
>>> Checking for cetype_t enumeration
>>> Using recent version of R with cetype_t enumeration type for  
>>> encoding
>>> checking for xmlsec1-config... no
>>> nodegc default
>>> No XML_WITH_ZLIB enumeration value.
>>>
>>> ****************************************
>>> Configuration information:
>>>
>>> Libxml settings
>>>
>>> libxml include directory: -I/usr/include/libxml2
>>> libxml library directory: -L/usr/lib -lxml2 -lz -lpthread - 
>>> licucore -lm -lz -lxml2
>>> libxml 2:                 -DLIBXML2=1
>>>
>>> Compilation flags:         -DLIBXML -I/usr/include/libxml2 - 
>>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - 
>>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - 
>>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - 
>>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - 
>>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1  -DHAVE_VALIDITY=1 - 
>>> DXML_REF_COUNT_NODES=1
>>> Link flags:               -L/usr/lib -lxml2 -lz -lpthread - 
>>> licucore -lm -lz -lxml2
>>>
>>> ****************************************
>>> configure: creating ./config.status
>>> config.status: creating src/Makevars
>>> config.status: creating R/supports.R
>>> config.status: creating inst/scripts/RSXML.csh
>>> config.status: creating inst/scripts/RSXML.bsh
>>> ** libs
>>> ** arch - i386
>>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ 
>>> Resources/include -I/Library/Frameworks/R.framework/Resources/ 
>>> include/i386 -DLIBXML -I/usr/include/libxml2 - 
>>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - 
>>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - 
>>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - 
>>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - 
>>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1  -DHAVE_VALIDITY=1 - 
>>> DXML_REF_COUNT_NODES=1  -I. -DLIBXML2=1 -I/usr/local/include    - 
>>> fPIC  -g -O2 -c DocParse.c -o DocParse.o
>>> In file included from DocParse.c:13:
>>> Utils.h:173:2: warning: #warning "Redefining COPY_TO_USER_STRING  
>>> to use encoding from XML parser"
>>> DocParse.c: In function ‘RS_XML_convertXMLDoc’:
>>> DocParse.c:359: warning: pointer targets in passing argument 2 of  
>>> ‘CreateCharSexpWithEncoding’ differ in signedness
>>> DocParse.c: In function ‘RS_XML_xmlNodeChildrenReferences’:
>>> DocParse.c:1197: warning: pointer targets in passing argument 2 of  
>>> ‘CreateCharSexpWithEncoding’ differ in signedness
>>> DocParse.c: In function ‘R_findXIncludeStartNodes’:
>>> DocParse.c:1573: warning: passing argument 2 of ‘addXInclude’ from  
>>> incompatible pointer type
>>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ 
>>> Resources/include -I/Library/Frameworks/R.framework/Resources/ 
>>> include/i386 -DLIBXML -I/usr/include/libxml2 - 
>>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - 
>>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - 
>>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - 
>>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - 
>>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1  -DHAVE_VALIDITY=1 - 
>>> DXML_REF_COUNT_NODES=1  -I. -DLIBXML2=1 -I/usr/local/include    - 
>>> fPIC  -g -O2 -c EventParse.c -o EventParse.o
>>> In file included from EventParse.c:15:
>>> Utils.h:173:2: warning: #warning "Redefining COPY_TO_USER_STRING  
>>> to use encoding from XML parser"
>>> EventParse.c: In function ‘RS_XML_entityDeclarationHandler’:
>>> EventParse.c:217: warning: pointer targets in passing argument 2  
>>> of ‘CreateCharSexpWithEncoding’ differ in signedness
>>> EventParse.c: In function ‘RS_XML_textHandler’:
>>> EventParse.c:404: warning: pointer targets in assignment differ in  
>>> signedness
>>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ 
>>> Resources/include -I/Library/Frameworks/R.framework/Resources/ 
>>> include/i386 -DLIBXML -I/usr/include/libxml2 - 
>>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - 
>>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - 
>>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - 
>>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - 
>>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1  -DHAVE_VALIDITY=1 - 
>>> DXML_REF_COUNT_NODES=1  -I. -DLIBXML2=1 -I/usr/local/include    - 
>>> fPIC  -g -O2 -c ExpatParse.c -o ExpatParse.o
>>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ 
>>> Resources/include -I/Library/Frameworks/R.framework/Resources/ 
>>> include/i386 -DLIBXML -I/usr/include/libxml2 - 
>>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - 
>>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - 
>>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - 
>>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - 
>>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1  -DHAVE_VALIDITY=1 - 
>>> DXML_REF_COUNT_NODES=1  -I. -DLIBXML2=1 -I/usr/local/include    - 
>>> fPIC  -g -O2 -c HTMLParse.c -o HTMLParse.o
>>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ 
>>> Resources/include -I/Library/Frameworks/R.framework/Resources/ 
>>> include/i386 -DLIBXML -I/usr/include/libxml2 - 
>>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - 
>>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - 
>>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - 
>>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - 
>>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1  -DHAVE_VALIDITY=1 - 
>>> DXML_REF_COUNT_NODES=1  -I. -DLIBXML2=1 -I/usr/local/include    - 
>>> fPIC  -g -O2 -c RSDTD.c -o RSDTD.o
>>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ 
>>> Resources/include -I/Library/Frameworks/R.framework/Resources/ 
>>> include/i386 -DLIBXML -I/usr/include/libxml2 - 
>>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - 
>>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - 
>>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - 
>>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - 
>>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1  -DHAVE_VALIDITY=1 - 
>>> DXML_REF_COUNT_NODES=1  -I. -DLIBXML2=1 -I/usr/local/include    - 
>>> fPIC  -g -O2 -c RUtils.c -o RUtils.o
>>> RUtils.c: In function ‘CreateCharSexpWithEncoding’:
>>> RUtils.c:294: warning: pointer targets in passing argument 2 of  
>>> ‘xmlStrcmp’ differ in signedness
>>> RUtils.c:294: warning: pointer targets in passing argument 2 of  
>>> ‘xmlStrcmp’ differ in signedness
>>> RUtils.c:296: warning: pointer targets in passing argument 2 of  
>>> ‘xmlStrcmp’ differ in signedness
>>> RUtils.c:296: warning: pointer targets in passing argument 2 of  
>>> ‘xmlStrcmp’ differ in signedness
>>> RUtils.c:299: warning: pointer targets in passing argument 1 of  
>>> ‘Rf_mkChar’ differ in signedness
>>> RUtils.c:299: warning: pointer targets in assignment differ in  
>>> signedness
>>> RUtils.c:302: warning: pointer targets in passing argument 1 of  
>>> ‘Rf_mkCharCE’ differ in signedness
>>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ 
>>> Resources/include -I/Library/Frameworks/R.framework/Resources/ 
>>> include/i386 -DLIBXML -I/usr/include/libxml2 - 
>>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - 
>>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - 
>>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - 
>>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - 
>>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1  -DHAVE_VALIDITY=1 - 
>>> DXML_REF_COUNT_NODES=1  -I. -DLIBXML2=1 -I/usr/local/include    - 
>>> fPIC  -g -O2 -c Rcatalog.c -o Rcatalog.o
>>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ 
>>> Resources/include -I/Library/Frameworks/R.framework/Resources/ 
>>> include/i386 -DLIBXML -I/usr/include/libxml2 - 
>>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - 
>>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - 
>>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - 
>>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - 
>>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1  -DHAVE_VALIDITY=1 - 
>>> DXML_REF_COUNT_NODES=1  -I. -DLIBXML2=1 -I/usr/local/include    - 
>>> fPIC  -g -O2 -c Utils.c -o Utils.o
>>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ 
>>> Resources/include -I/Library/Frameworks/R.framework/Resources/ 
>>> include/i386 -DLIBXML -I/usr/include/libxml2 - 
>>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - 
>>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - 
>>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - 
>>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - 
>>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1  -DHAVE_VALIDITY=1 - 
>>> DXML_REF_COUNT_NODES=1  -I. -DLIBXML2=1 -I/usr/local/include    - 
>>> fPIC  -g -O2 -c XMLEventParse.c -o XMLEventParse.o
>>> In file included from XMLEventParse.c:5:
>>> Utils.h:173:2: warning: #warning "Redefining COPY_TO_USER_STRING  
>>> to use encoding from XML parser"
>>> XMLEventParse.c: In function ‘R_processBranch’:
>>> XMLEventParse.c:343: warning: initialization from incompatible  
>>> pointer type
>>> XMLEventParse.c:352: warning: pointer targets in passing argument  
>>> 3 of ‘xmlSetProp’ differ in signedness
>>> XMLEventParse.c: In function ‘RS_XML_xmlSAX2StartElementNs’:
>>> XMLEventParse.c:478: warning: pointer targets in passing argument  
>>> 2 of ‘CreateCharSexpWithEncoding’ differ in signedness
>>> XMLEventParse.c: In function ‘RS_XML_xmlSAX2EndElementNs’:
>>> XMLEventParse.c:529: warning: pointer targets in passing argument  
>>> 2 of ‘CreateCharSexpWithEncoding’ differ in signedness
>>> XMLEventParse.c:534: warning: pointer targets in passing argument  
>>> 1 of ‘findEndElementFun’ differ in signedness
>>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ 
>>> Resources/include -I/Library/Frameworks/R.framework/Resources/ 
>>> include/i386 -DLIBXML -I/usr/include/libxml2 - 
>>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - 
>>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - 
>>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - 
>>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - 
>>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1  -DHAVE_VALIDITY=1 - 
>>> DXML_REF_COUNT_NODES=1  -I. -DLIBXML2=1 -I/usr/local/include    - 
>>> fPIC  -g -O2 -c XMLHashTree.c -o XMLHashTree.o
>>> XMLHashTree.c: In function ‘makeHashNode’:
>>> XMLHashTree.c:87: warning: pointer targets in passing argument 1  
>>> of ‘Rf_mkString’ differ in signedness
>>> XMLHashTree.c:99: warning: pointer targets in passing argument 1  
>>> of ‘Rf_mkString’ differ in signedness
>>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ 
>>> Resources/include -I/Library/Frameworks/R.framework/Resources/ 
>>> include/i386 -DLIBXML -I/usr/include/libxml2 - 
>>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - 
>>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - 
>>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - 
>>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - 
>>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1  -DHAVE_VALIDITY=1 - 
>>> DXML_REF_COUNT_NODES=1  -I. -DLIBXML2=1 -I/usr/local/include    - 
>>> fPIC  -g -O2 -c XMLTree.c -o XMLTree.o
>>> In file included from XMLTree.c:40:
>>> Utils.h:173:2: warning: #warning "Redefining COPY_TO_USER_STRING  
>>> to use encoding from XML parser"
>>> XMLTree.c: In function ‘removeNodeNamespaceByName’:
>>> XMLTree.c:245: warning: pointer targets in passing argument 1 of  
>>> ‘strcmp’ differ in signedness
>>> XMLTree.c:254: warning: pointer targets in passing argument 1 of  
>>> ‘strcmp’ differ in signedness
>>> XMLTree.c: In function ‘RS_XML_removeNodeNamespaces’:
>>> XMLTree.c:312: warning: pointer targets in passing argument 2 of  
>>> ‘removeNodeNamespaceByName’ differ in signedness
>>> XMLTree.c: In function ‘R_insertXMLNode’:
>>> XMLTree.c:506: warning: pointer targets in passing argument 1 of  
>>> ‘xmlNewText’ differ in signedness
>>> XMLTree.c: In function ‘R_convertXMLNsRef’:
>>> XMLTree.c:922: warning: pointer targets in passing argument 1 of  
>>> ‘Rf_mkString’ differ in signedness
>>> XMLTree.c:923: warning: pointer type mismatch in conditional  
>>> expression
>>> XMLTree.c: In function ‘RS_XML_printXMLNode’:
>>> XMLTree.c:1443: warning: pointer targets in passing argument 1 of  
>>> ‘Rf_mkChar’ differ in signedness
>>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/ 
>>> Resources/include -I/Library/Frameworks/R.framework/Resources/ 
>>> include/i386 -DLIBXML -I/usr/include/libxml2 - 
>>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 - 
>>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 - 
>>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 - 
>>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 - 
>>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1  -DHAVE_VALIDITY=1 - 
>>> DXML_REF_COUNT_NODES=1  -I. -DLIBXML2=1 -I/usr/local/include    - 
>>> fPIC  -g -O2 -c libxmlFeatures.c -o libxmlFeatures.o
>>> libxmlFeatures.c: In function ‘R_getXMLFeatures’:
>>> libxmlFeatures.c:14: error: ‘XML_WITH_THREAD’ undeclared (first  
>>> use in this function)
>>> libxmlFeatures.c:14: error: (Each undeclared identifier is  
>>> reported only once
>>> libxmlFeatures.c:14: error: for each function it appears in.)
>>> libxmlFeatures.c:15: error: ‘XML_WITH_TREE’ undeclared (first use  
>>> inthis function)
>>> libxmlFeatures.c:16: error: ‘XML_WITH_OUTPUT’ undeclared (first  
>>> use in this function)
>>> libxmlFeatures.c:17: error: ‘XML_WITH_PUSH’ undeclared (first use  
>>> inthis function)
>>> libxmlFeatures.c:18: error: ‘XML_WITH_READER’ undeclared (first  
>>> use in this function)
>>> libxmlFeatures.c:19: error: ‘XML_WITH_PATTERN’ undeclared (first  
>>> usein this function)
>>> libxmlFeatures.c:20: error: ‘XML_WITH_WRITER’ undeclared (first  
>>> use in this function)
>>> libxmlFeatures.c:21: error: ‘XML_WITH_SAX1’ undeclared (first use  
>>> inthis function)
>>> libxmlFeatures.c:22: error: ‘XML_WITH_FTP’ undeclared (first use  
>>> in this function)
>>> libxmlFeatures.c:23: error: ‘XML_WITH_HTTP’ undeclared (first use  
>>> inthis function)
>>> libxmlFeatures.c:24: error: ‘XML_WITH_VALID’ undeclared (first use  
>>> in this function)
>>> libxmlFeatures.c:25: error: ‘XML_WITH_HTML’ undeclared (first use  
>>> inthis function)
>>> libxmlFeatures.c:26: error: ‘XML_WITH_LEGACY’ undeclared (first  
>>> use in this function)
>>> libxmlFeatures.c:27: error: ‘XML_WITH_C14N’ undeclared (first use  
>>> inthis function)
>>> libxmlFeatures.c:28: error: ‘XML_WITH_CATALOG’ undeclared (first  
>>> usein this function)
>>> libxmlFeatures.c:29: error: ‘XML_WITH_XPATH’ undeclared (first use  
>>> in this function)
>>> libxmlFeatures.c:30: error: ‘XML_WITH_XPTR’ undeclared (first use  
>>> inthis function)
>>> libxmlFeatures.c:31: error: ‘XML_WITH_XINCLUDE’ undeclared (first  
>>> use in this function)
>>> libxmlFeatures.c:32: error: ‘XML_WITH_ICONV’ undeclared (first use  
>>> in this function)
>>> libxmlFeatures.c:33: error: ‘XML_WITH_ISO8859X’ undeclared (first  
>>> use in this function)
>>> libxmlFeatures.c:34: error: ‘XML_WITH_UNICODE’ undeclared (first  
>>> usein this function)
>>> libxmlFeatures.c:35: error: ‘XML_WITH_REGEXP’ undeclared (first  
>>> use in this function)
>>> libxmlFeatures.c:36: error: ‘XML_WITH_AUTOMATA’ undeclared (first  
>>> use in this function)
>>> libxmlFeatures.c:37: error: ‘XML_WITH_EXPR’ undeclared (first use  
>>> inthis function)
>>> libxmlFeatures.c:38: error: ‘XML_WITH_SCHEMAS’ undeclared (first  
>>> usein this function)
>>> libxmlFeatures.c:39: error: ‘XML_WITH_SCHEMATRON’ undeclared  
>>> (first use in this function)
>>> libxmlFeatures.c:40: error: ‘XML_WITH_MODULES’ undeclared (first  
>>> usein this function)
>>> libxmlFeatures.c:41: error: ‘XML_WITH_DEBUG’ undeclared (first use  
>>> in this function)
>>> libxmlFeatures.c:42: error: ‘XML_WITH_DEBUG_MEM’ undeclared (first  
>>> use in this function)
>>> libxmlFeatures.c:43: error: ‘XML_WITH_DEBUG_RUN’ undeclared (first  
>>> use in this function)
>>> libxmlFeatures.c:92: warning: implicit declaration of function  
>>> ‘xmlHasFeature’
>>> make: *** [libxmlFeatures.o] Error 1
>>> ERROR: compilation failed for package ‘XML’
>>> * Removing ‘/Library/Frameworks/R.framework/Versions/2.9/Resources/ 
>>> library/XML’
>>>
>>>
>>>
>>> i also tried to install :
>>>
>>> libxml2-sources-2.7.3
>>>
>>> using no specific option in configure, just  : ./configure make  
>>> make install (in usr/local) but the log seems to not changes.
>>>
>>>
>>> need i to add some "configure args" when installing XML pachage in  
>>> R ?
>>>
>>> [[elided Yahoo spam]]
>>>
>>> regards,
>>>
>>> Massimo Di Stefano.
>>> _______________________________________________
>>> R-SIG-Mac mailing list
>>> R-SIG-Mac at stat.math.ethz.ch
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>>
>> -- 
>> Brian D. Ripley,                  ripley at stats.ox.ac.uk
>> Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
>> University of Oxford,             Tel:  +44 1865 272861 (self)
>> 1 South Parks Road,                     +44 1865 272866 (PA)
>> Oxford OX1 3TG, UK                Fax:  +44 1865 272595
>
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