[R-SIG-Mac] XML pachage on mac osx leopard
Massimo Di Stefano
massimodisasha at yahoo.it
Mon Jun 15 01:19:16 CEST 2009
I moved ttemporary the xml2-config :
sudo mv /usr/bin/xml2-config /usr/bin/xml2-config.back
then done a simlink :
sudo ln -s /usr/local/bin/ml2-config /usr/bin/
then i succesfull installed the needed packages (spgrass6)
... now i ripristinate the system libxml2
i hope the package will work :-/
... or ripristinate the system libxml will broke the xml pamackage
in R ?
any code strip to see if it continue to works as aspected ?
thanks !!!
Massimo Di Stefano
p.s.
how to change in R the order of searching path ?
in usr local i've some libraries installed from source
that maybe are newer vdersion that the system version
...
i've some unix stuff installed in my framework too (gdal, jpeg,
libtiff and others)
to install rgdal im using : --with-configure-args option in the R
CMD install command
...
it is possible to add frameworks to the R search-lib path ?
Il giorno 14/giu/09, alle ore 23:58, Prof Brian Ripley ha scritto:
> Which version of package XML is this? For 2.5.0 at least, you need
> a more recent version of libxml2 (as the log you show does warn you).
>
> The CRAN install log at
>
> http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/XML-00install.html
>
> shows the same problem for XML 2.5.1.
>
>> i also tried to install :
>>
>> libxml2-sources-2.7.3
>>
>> using no specific option in configure, just : ./configure make make
> install
>> (in usr/local) but the log seems to not changes.
>
> Ah, but note you have
>
>> checking for xml2-config... /usr/bin/xml2-config
>
> Is /usr/bin ahead of /usr/local/bin in your path? I needed to
> change the path order.
>
> Alternatively, XML 2.3.0 should work, and there is a binary on CRAN.
> (But some other Omegahat packages seem to need XML >= 2.5.0 without
> saying so: one is XMLschema on which SSOAP depends. OTOH, quite a
> few other packages are unhappy with XML 2.5.x.)
>
>
> On Sun, 14 Jun 2009, Massimo Di Stefano wrote:
>
>> Hi All,
>>
>> i'm tring to install XML pachage on osx leopard but the build fails
>> with this log :
>>
>> * Installing *source* package ‘XML’ ...
>> checking for gcc... gcc
>> checking for C compiler default output file name... a.out
>> checking whether the C compiler works... yes
>> checking whether we are cross compiling... no
>> checking for suffix of executables...
>> checking for suffix of object files... o
>> checking whether we are using the GNU C compiler... yes
>> checking whether gcc accepts -g... yes
>> checking for gcc option to accept ISO C89... none needed
>> checking how to run the C preprocessor... gcc -E
>> checking for sed... /usr/bin/sed
>> checking for pkg-config... no
>> checking for xml2-config... /usr/bin/xml2-config
>> USE_XML2 = yes
>> SED_EXTENDED_ARG: -E
>> Minor 6, Patch 16 for 2.6.16
>> Located parser file -I/usr/include/libxml2/parser.h
>> Checking for 1.8: -I/usr/include/libxml2
>> Using libxml2.*
>> checking for gzopen in -lz... yes
>> checking for xmlParseFile in -lxml2... yes
>> checking for xmlHashSize in -lxml2... yes
>> Using built-in xmlHashSize
>> Checking DTD parsing (presence of externalSubset)...
>> checking for xmlHashSize in -lxml2... yes
>> Found xmlHashSize
>> checking for xmlOutputBufferCreateBuffer in -lxml2... no
>> Using local xmlOutputBufferCreateBuffer. You might think about
>> installing a newer version of libxml2, at least 2.6.23
>> checking for xmlDocDumpFormatMemoryEnc in -lxml2... yes
>> checking libxml/xmlversion.h usability... yes
>> checking libxml/xmlversion.h presence... yes
>> checking for libxml/xmlversion.h... yes
>> Expat: FALSE
>> Checking for return type of xmlHashScan element routine.
>> No return value for xmlHashScan
>> No context field in xmlNs structure.
>> Checking for cetype_t enumeration
>> Using recent version of R with cetype_t enumeration type for encoding
>> checking for xmlsec1-config... no
>> nodegc default
>> No XML_WITH_ZLIB enumeration value.
>>
>> ****************************************
>> Configuration information:
>>
>> Libxml settings
>>
>> libxml include directory: -I/usr/include/libxml2
>> libxml library directory: -L/usr/lib -lxml2 -lz -lpthread -licucore
>> -lm -lz -lxml2
>> libxml 2: -DLIBXML2=1
>>
>> Compilation flags: -DLIBXML -I/usr/include/libxml2 -
>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -
>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 -
>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -
>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -
>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -
>> DXML_REF_COUNT_NODES=1
>> Link flags: -L/usr/lib -lxml2 -lz -lpthread -licucore
>> -lm -lz -lxml2
>>
>> ****************************************
>> configure: creating ./config.status
>> config.status: creating src/Makevars
>> config.status: creating R/supports.R
>> config.status: creating inst/scripts/RSXML.csh
>> config.status: creating inst/scripts/RSXML.bsh
>> ** libs
>> ** arch - i386
>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/
>> Resources/include -I/Library/Frameworks/R.framework/Resources/
>> include/i386 -DLIBXML -I/usr/include/libxml2 -
>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -
>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 -
>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -
>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -
>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -
>> DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -
>> fPIC -g -O2 -c DocParse.c -o DocParse.o
>> In file included from DocParse.c:13:
>> Utils.h:173:2: warning: #warning "Redefining COPY_TO_USER_STRING to
>> use encoding from XML parser"
>> DocParse.c: In function ‘RS_XML_convertXMLDoc’:
>> DocParse.c:359: warning: pointer targets in passing argument 2 of
>> ‘CreateCharSexpWithEncoding’ differ in signedness
>> DocParse.c: In function ‘RS_XML_xmlNodeChildrenReferences’:
>> DocParse.c:1197: warning: pointer targets in passing argument 2 of
>> ‘CreateCharSexpWithEncoding’ differ in signedness
>> DocParse.c: In function ‘R_findXIncludeStartNodes’:
>> DocParse.c:1573: warning: passing argument 2 of ‘addXInclude’ from
>> incompatible pointer type
>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/
>> Resources/include -I/Library/Frameworks/R.framework/Resources/
>> include/i386 -DLIBXML -I/usr/include/libxml2 -
>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -
>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 -
>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -
>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -
>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -
>> DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -
>> fPIC -g -O2 -c EventParse.c -o EventParse.o
>> In file included from EventParse.c:15:
>> Utils.h:173:2: warning: #warning "Redefining COPY_TO_USER_STRING to
>> use encoding from XML parser"
>> EventParse.c: In function ‘RS_XML_entityDeclarationHandler’:
>> EventParse.c:217: warning: pointer targets in passing argument 2 of
>> ‘CreateCharSexpWithEncoding’ differ in signedness
>> EventParse.c: In function ‘RS_XML_textHandler’:
>> EventParse.c:404: warning: pointer targets in assignment differ in
>> signedness
>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/
>> Resources/include -I/Library/Frameworks/R.framework/Resources/
>> include/i386 -DLIBXML -I/usr/include/libxml2 -
>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -
>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 -
>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -
>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -
>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -
>> DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -
>> fPIC -g -O2 -c ExpatParse.c -o ExpatParse.o
>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/
>> Resources/include -I/Library/Frameworks/R.framework/Resources/
>> include/i386 -DLIBXML -I/usr/include/libxml2 -
>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -
>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 -
>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -
>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -
>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -
>> DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -
>> fPIC -g -O2 -c HTMLParse.c -o HTMLParse.o
>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/
>> Resources/include -I/Library/Frameworks/R.framework/Resources/
>> include/i386 -DLIBXML -I/usr/include/libxml2 -
>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -
>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 -
>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -
>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -
>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -
>> DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -
>> fPIC -g -O2 -c RSDTD.c -o RSDTD.o
>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/
>> Resources/include -I/Library/Frameworks/R.framework/Resources/
>> include/i386 -DLIBXML -I/usr/include/libxml2 -
>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -
>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 -
>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -
>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -
>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -
>> DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -
>> fPIC -g -O2 -c RUtils.c -o RUtils.o
>> RUtils.c: In function ‘CreateCharSexpWithEncoding’:
>> RUtils.c:294: warning: pointer targets in passing argument 2 of
>> ‘xmlStrcmp’ differ in signedness
>> RUtils.c:294: warning: pointer targets in passing argument 2 of
>> ‘xmlStrcmp’ differ in signedness
>> RUtils.c:296: warning: pointer targets in passing argument 2 of
>> ‘xmlStrcmp’ differ in signedness
>> RUtils.c:296: warning: pointer targets in passing argument 2 of
>> ‘xmlStrcmp’ differ in signedness
>> RUtils.c:299: warning: pointer targets in passing argument 1 of
>> ‘Rf_mkChar’ differ in signedness
>> RUtils.c:299: warning: pointer targets in assignment differ in
>> signedness
>> RUtils.c:302: warning: pointer targets in passing argument 1 of
>> ‘Rf_mkCharCE’ differ in signedness
>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/
>> Resources/include -I/Library/Frameworks/R.framework/Resources/
>> include/i386 -DLIBXML -I/usr/include/libxml2 -
>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -
>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 -
>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -
>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -
>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -
>> DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -
>> fPIC -g -O2 -c Rcatalog.c -o Rcatalog.o
>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/
>> Resources/include -I/Library/Frameworks/R.framework/Resources/
>> include/i386 -DLIBXML -I/usr/include/libxml2 -
>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -
>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 -
>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -
>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -
>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -
>> DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -
>> fPIC -g -O2 -c Utils.c -o Utils.o
>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/
>> Resources/include -I/Library/Frameworks/R.framework/Resources/
>> include/i386 -DLIBXML -I/usr/include/libxml2 -
>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -
>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 -
>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -
>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -
>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -
>> DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -
>> fPIC -g -O2 -c XMLEventParse.c -o XMLEventParse.o
>> In file included from XMLEventParse.c:5:
>> Utils.h:173:2: warning: #warning "Redefining COPY_TO_USER_STRING to
>> use encoding from XML parser"
>> XMLEventParse.c: In function ‘R_processBranch’:
>> XMLEventParse.c:343: warning: initialization from incompatible
>> pointer type
>> XMLEventParse.c:352: warning: pointer targets in passing argument 3
>> of ‘xmlSetProp’ differ in signedness
>> XMLEventParse.c: In function ‘RS_XML_xmlSAX2StartElementNs’:
>> XMLEventParse.c:478: warning: pointer targets in passing argument 2
>> of ‘CreateCharSexpWithEncoding’ differ in signedness
>> XMLEventParse.c: In function ‘RS_XML_xmlSAX2EndElementNs’:
>> XMLEventParse.c:529: warning: pointer targets in passing argument 2
>> of ‘CreateCharSexpWithEncoding’ differ in signedness
>> XMLEventParse.c:534: warning: pointer targets in passing argument 1
>> of ‘findEndElementFun’ differ in signedness
>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/
>> Resources/include -I/Library/Frameworks/R.framework/Resources/
>> include/i386 -DLIBXML -I/usr/include/libxml2 -
>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -
>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 -
>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -
>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -
>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -
>> DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -
>> fPIC -g -O2 -c XMLHashTree.c -o XMLHashTree.o
>> XMLHashTree.c: In function ‘makeHashNode’:
>> XMLHashTree.c:87: warning: pointer targets in passing argument 1 of
>> ‘Rf_mkString’ differ in signedness
>> XMLHashTree.c:99: warning: pointer targets in passing argument 1 of
>> ‘Rf_mkString’ differ in signedness
>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/
>> Resources/include -I/Library/Frameworks/R.framework/Resources/
>> include/i386 -DLIBXML -I/usr/include/libxml2 -
>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -
>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 -
>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -
>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -
>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -
>> DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -
>> fPIC -g -O2 -c XMLTree.c -o XMLTree.o
>> In file included from XMLTree.c:40:
>> Utils.h:173:2: warning: #warning "Redefining COPY_TO_USER_STRING to
>> use encoding from XML parser"
>> XMLTree.c: In function ‘removeNodeNamespaceByName’:
>> XMLTree.c:245: warning: pointer targets in passing argument 1 of
>> ‘strcmp’ differ in signedness
>> XMLTree.c:254: warning: pointer targets in passing argument 1 of
>> ‘strcmp’ differ in signedness
>> XMLTree.c: In function ‘RS_XML_removeNodeNamespaces’:
>> XMLTree.c:312: warning: pointer targets in passing argument 2 of
>> ‘removeNodeNamespaceByName’ differ in signedness
>> XMLTree.c: In function ‘R_insertXMLNode’:
>> XMLTree.c:506: warning: pointer targets in passing argument 1 of
>> ‘xmlNewText’ differ in signedness
>> XMLTree.c: In function ‘R_convertXMLNsRef’:
>> XMLTree.c:922: warning: pointer targets in passing argument 1 of
>> ‘Rf_mkString’ differ in signedness
>> XMLTree.c:923: warning: pointer type mismatch in conditional
>> expression
>> XMLTree.c: In function ‘RS_XML_printXMLNode’:
>> XMLTree.c:1443: warning: pointer targets in passing argument 1 of
>> ‘Rf_mkChar’ differ in signedness
>> gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/
>> Resources/include -I/Library/Frameworks/R.framework/Resources/
>> include/i386 -DLIBXML -I/usr/include/libxml2 -
>> DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -
>> DNO_CHECKED_ENTITY_FIELD=1 -DADD_XML_OUTPUT_BUFFER_CODE=1 -
>> DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -
>> DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -
>> DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -
>> DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -
>> fPIC -g -O2 -c libxmlFeatures.c -o libxmlFeatures.o
>> libxmlFeatures.c: In function ‘R_getXMLFeatures’:
>> libxmlFeatures.c:14: error: ‘XML_WITH_THREAD’ undeclared (first use
>> in this function)
>> libxmlFeatures.c:14: error: (Each undeclared identifier is reported
>> only once
>> libxmlFeatures.c:14: error: for each function it appears in.)
>> libxmlFeatures.c:15: error: ‘XML_WITH_TREE’ undeclared (first use
>> inthis function)
>> libxmlFeatures.c:16: error: ‘XML_WITH_OUTPUT’ undeclared (first use
>> in this function)
>> libxmlFeatures.c:17: error: ‘XML_WITH_PUSH’ undeclared (first use
>> inthis function)
>> libxmlFeatures.c:18: error: ‘XML_WITH_READER’ undeclared (first use
>> in this function)
>> libxmlFeatures.c:19: error: ‘XML_WITH_PATTERN’ undeclared (first
>> usein this function)
>> libxmlFeatures.c:20: error: ‘XML_WITH_WRITER’ undeclared (first use
>> in this function)
>> libxmlFeatures.c:21: error: ‘XML_WITH_SAX1’ undeclared (first use
>> inthis function)
>> libxmlFeatures.c:22: error: ‘XML_WITH_FTP’ undeclared (first use in
>> this function)
>> libxmlFeatures.c:23: error: ‘XML_WITH_HTTP’ undeclared (first use
>> inthis function)
>> libxmlFeatures.c:24: error: ‘XML_WITH_VALID’ undeclared (first use
>> in this function)
>> libxmlFeatures.c:25: error: ‘XML_WITH_HTML’ undeclared (first use
>> inthis function)
>> libxmlFeatures.c:26: error: ‘XML_WITH_LEGACY’ undeclared (first use
>> in this function)
>> libxmlFeatures.c:27: error: ‘XML_WITH_C14N’ undeclared (first use
>> inthis function)
>> libxmlFeatures.c:28: error: ‘XML_WITH_CATALOG’ undeclared (first
>> usein this function)
>> libxmlFeatures.c:29: error: ‘XML_WITH_XPATH’ undeclared (first use
>> in this function)
>> libxmlFeatures.c:30: error: ‘XML_WITH_XPTR’ undeclared (first use
>> inthis function)
>> libxmlFeatures.c:31: error: ‘XML_WITH_XINCLUDE’ undeclared (first
>> use in this function)
>> libxmlFeatures.c:32: error: ‘XML_WITH_ICONV’ undeclared (first use
>> in this function)
>> libxmlFeatures.c:33: error: ‘XML_WITH_ISO8859X’ undeclared (first
>> use in this function)
>> libxmlFeatures.c:34: error: ‘XML_WITH_UNICODE’ undeclared (first
>> usein this function)
>> libxmlFeatures.c:35: error: ‘XML_WITH_REGEXP’ undeclared (first use
>> in this function)
>> libxmlFeatures.c:36: error: ‘XML_WITH_AUTOMATA’ undeclared (first
>> use in this function)
>> libxmlFeatures.c:37: error: ‘XML_WITH_EXPR’ undeclared (first use
>> inthis function)
>> libxmlFeatures.c:38: error: ‘XML_WITH_SCHEMAS’ undeclared (first
>> usein this function)
>> libxmlFeatures.c:39: error: ‘XML_WITH_SCHEMATRON’ undeclared (first
>> use in this function)
>> libxmlFeatures.c:40: error: ‘XML_WITH_MODULES’ undeclared (first
>> usein this function)
>> libxmlFeatures.c:41: error: ‘XML_WITH_DEBUG’ undeclared (first use
>> in this function)
>> libxmlFeatures.c:42: error: ‘XML_WITH_DEBUG_MEM’ undeclared (first
>> use in this function)
>> libxmlFeatures.c:43: error: ‘XML_WITH_DEBUG_RUN’ undeclared (first
>> use in this function)
>> libxmlFeatures.c:92: warning: implicit declaration of function
>> ‘xmlHasFeature’
>> make: *** [libxmlFeatures.o] Error 1
>> ERROR: compilation failed for package ‘XML’
>> * Removing ‘/Library/Frameworks/R.framework/Versions/2.9/Resources/
>> library/XML’
>>
>>
>>
>> i also tried to install :
>>
>> libxml2-sources-2.7.3
>>
>> using no specific option in configure, just : ./configure make
>> make install (in usr/local) but the log seems to not changes.
>>
>>
>> need i to add some "configure args" when installing XML pachage in
>> R ?
>>
>> [[elided Yahoo spam]]
>>
>> regards,
>>
>> Massimo Di Stefano.
>> _______________________________________________
>> R-SIG-Mac mailing list
>> R-SIG-Mac at stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
> --
> Brian D. Ripley, ripley at stats.ox.ac.uk
> Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
> University of Oxford, Tel: +44 1865 272861 (self)
> 1 South Parks Road, +44 1865 272866 (PA)
> Oxford OX1 3TG, UK Fax: +44 1865 272595
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