[R-SIG-Mac] mac OS X 10.5.7 rgdal installation problems
stephen sefick
ssefick at gmail.com
Thu Jul 2 21:15:02 CEST 2009
here is everything so far, and I still don't know what is going on.
thanks,
Stephen Sefick
Command:
which gcc
output:
/usr/bin/gcc
Command:
R CMD install --configure-args='--with-proj-include=/sw/include/proj' rgdal
Command Output:
Installing to library ‘/Library/Frameworks/R.framework/Resources/library’
* Installing *source* package ‘rgdal’ ...
gdal-config: gdal-config
checking for gcc... gcc -arch i386 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch i386 -std=gnu99 accepts -g... yes
checking for gcc -arch i386 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -arch i386 -std=gnu99 -E
checking for egrep... grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking proj_api.h usability... no
checking proj_api.h presence... no
checking for proj_api.h... no
Error: proj_api.h not found.
If the PROJ.4 library is installed in a non-standard location,
use --configure-args='--with-proj-include=/opt/local/include'
for example, replacing /opt/local/* with appropriate values
for your installation. If PROJ.4 is not installed, install it.
ERROR: configuration failed for package ‘rgdal’
* Removing ‘/Library/Frameworks/R.framework/Resources/library/rgdal’
console output:
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by configure, which was
generated by GNU Autoconf 2.59. Invocation command line was
$ ./configure --with-proj-include=/sw/include/proj
## --------- ##
## Platform. ##
## --------- ##
hostname = adsl-89-8-94.mgm.bellsouth.net
uname -m = i386
uname -r = 9.7.0
uname -s = Darwin
uname -v = Darwin Kernel Version 9.7.0: Tue Mar 31 22:52:17 PDT 2009;
root:xnu-1228.12.14~1/RELEASE_I386
/usr/bin/uname -p = i386
/bin/uname -X = unknown
/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
hostinfo = Mach kernel version:
Darwin Kernel Version 9.7.0: Tue Mar 31 22:52:17 PDT 2009;
root:xnu-1228.12.14~1/RELEASE_I386
Kernel configured for up to 2 processors.
2 processors are physically available.
2 processors are logically available.
Processor type: i486 (Intel 80486)
Processors active: 0 1
Primary memory available: 1.00 gigabytes
Default processor set: 92 tasks, 332 threads, 2 processors
Load average: 1.07, Mach factor: 1.26
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /sw/bin
PATH: /sw/sbin
PATH: /opt/local/bin
PATH: /opt/local/sbin
PATH: /usr/bin
PATH: /bin
PATH: /usr/sbin
PATH: /sbin
PATH: /usr/local/bin
PATH: UnRarX.app/Contents/Resources
PATH: /usr/texbin
PATH: /usr/X11/bin
PATH: /usr/X11R6/bin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:1419: checking for gcc
configure:1445: result: gcc -arch i386 -std=gnu99
configure:1689: checking for C compiler version
configure:1692: gcc -arch i386 -std=gnu99 --version </dev/null >&5
i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5490)
Copyright (C) 2005 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:1695: $? = 0
configure:1697: gcc -arch i386 -std=gnu99 -v </dev/null >&5
Using built-in specs.
Target: i686-apple-darwin9
Configured with: /var/tmp/gcc/gcc-5490~1/src/configure
--disable-checking -enable-werror --prefix=/usr --mandir=/share/man
--enable-languages=c,objc,c++,obj-c++
--program-transform-name=/^[cg][^.-]*$/s/$/-4.0/
--with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/usr/lib
--build=i686-apple-darwin9 --with-arch=apple --with-tune=generic
--host=i686-apple-darwin9 --target=i686-apple-darwin9
Thread model: posix
gcc version 4.0.1 (Apple Inc. build 5490)
configure:1700: $? = 0
configure:1702: gcc -arch i386 -std=gnu99 -V </dev/null >&5
gcc-4.0: argument to `-V' is missing
configure:1705: $? = 1
configure:1728: checking for C compiler default output file name
configure:1731: gcc -arch i386 -std=gnu99 -g -O2 -I/sw/include/proj
-I/sw/include/gdal1 conftest.c >&5
configure:1734: $? = 0
configure:1780: result: a.out
configure:1785: checking whether the C compiler works
configure:1791: ./a.out
configure:1794: $? = 0
configure:1811: result: yes
configure:1818: checking whether we are cross compiling
configure:1820: result: no
configure:1823: checking for suffix of executables
configure:1825: gcc -arch i386 -std=gnu99 -o conftest -g -O2
-I/sw/include/proj -I/sw/include/gdal1 conftest.c >&5
configure:1828: $? = 0
configure:1853: result:
configure:1859: checking for suffix of object files
configure:1880: gcc -arch i386 -std=gnu99 -c -g -O2
-I/sw/include/proj -I/sw/include/gdal1 conftest.c >&5
configure:1883: $? = 0
configure:1905: result: o
configure:1909: checking whether we are using the GNU C compiler
configure:1933: gcc -arch i386 -std=gnu99 -c -g -O2
-I/sw/include/proj -I/sw/include/gdal1 conftest.c >&5
configure:1939: $? = 0
configure:1943: test -z
|| test ! -s conftest.err
configure:1946: $? = 0
configure:1949: test -s conftest.o
configure:1952: $? = 0
configure:1965: result: yes
configure:1971: checking whether gcc -arch i386 -std=gnu99 accepts -g
configure:1992: gcc -arch i386 -std=gnu99 -c -g -I/sw/include/proj
-I/sw/include/gdal1 conftest.c >&5
configure:1998: $? = 0
configure:2002: test -z
|| test ! -s conftest.err
configure:2005: $? = 0
configure:2008: test -s conftest.o
configure:2011: $? = 0
configure:2022: result: yes
configure:2039: checking for gcc -arch i386 -std=gnu99 option to accept ANSI C
configure:2109: gcc -arch i386 -std=gnu99 -c -g -O2
-I/sw/include/proj -I/sw/include/gdal1 conftest.c >&5
configure:2115: $? = 0
configure:2119: test -z
|| test ! -s conftest.err
configure:2122: $? = 0
configure:2125: test -s conftest.o
configure:2128: $? = 0
configure:2146: result: none needed
configure:2164: gcc -arch i386 -std=gnu99 -c -g -O2
-I/sw/include/proj -I/sw/include/gdal1 conftest.c >&5
conftest.c:2: error: syntax error before 'me'
configure:2170: $? = 1
configure: failed program was:
| #ifndef __cplusplus
| choke me
| #endif
configure:2309: checking how to run the C preprocessor
configure:2344: gcc -arch i386 -std=gnu99 -E -I/sw/include/proj
-I/sw/include/gdal1 conftest.c
configure:2350: $? = 0
configure:2382: gcc -arch i386 -std=gnu99 -E -I/sw/include/proj
-I/sw/include/gdal1 conftest.c
conftest.c:9:28: error: ac_nonexistent.h: No such file or directory
configure:2388: $? = 1
configure: failed program was:
| /* confdefs.h. */
|
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:2427: result: gcc -arch i386 -std=gnu99 -E
configure:2451: gcc -arch i386 -std=gnu99 -E -I/sw/include/proj
-I/sw/include/gdal1 conftest.c
configure:2457: $? = 0
configure:2489: gcc -arch i386 -std=gnu99 -E -I/sw/include/proj
-I/sw/include/gdal1 conftest.c
conftest.c:9:28: error: ac_nonexistent.h: No such file or directory
configure:2495: $? = 1
configure: failed program was:
| /* confdefs.h. */
|
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:2539: checking for egrep
configure:2549: result: grep -E
configure:2554: checking for ANSI C header files
configure:2579: gcc -arch i386 -std=gnu99 -c -g -O2
-I/sw/include/proj -I/sw/include/gdal1 conftest.c >&5
configure:2585: $? = 0
configure:2589: test -z
|| test ! -s conftest.err
configure:2592: $? = 0
configure:2595: test -s conftest.o
configure:2598: $? = 0
configure:2687: gcc -arch i386 -std=gnu99 -o conftest -g -O2
-I/sw/include/proj -I/sw/include/gdal1 conftest.c >&5
conftest.c: In function 'main':
conftest.c:26: warning: implicit declaration of function 'exit'
conftest.c:26: warning: incompatible implicit declaration of built-in
function 'exit'
conftest.c:27: warning: incompatible implicit declaration of built-in
function 'exit'
configure:2690: $? = 0
configure:2692: ./conftest
configure:2695: $? = 0
configure:2710: result: yes
configure:2734: checking for sys/types.h
configure:2750: gcc -arch i386 -std=gnu99 -c -g -O2
-I/sw/include/proj -I/sw/include/gdal1 conftest.c >&5
configure:2756: $? = 0
configure:2760: test -z
|| test ! -s conftest.err
configure:2763: $? = 0
configure:2766: test -s conftest.o
configure:2769: $? = 0
configure:2780: result: yes
configure:2734: checking for sys/stat.h
configure:2750: gcc -arch i386 -std=gnu99 -c -g -O2
-I/sw/include/proj -I/sw/include/gdal1 conftest.c >&5
configure:2756: $? = 0
configure:2760: test -z
|| test ! -s conftest.err
configure:2763: $? = 0
configure:2766: test -s conftest.o
configure:2769: $? = 0
configure:2780: result: yes
configure:2734: checking for stdlib.h
configure:2750: gcc -arch i386 -std=gnu99 -c -g -O2
-I/sw/include/proj -I/sw/include/gdal1 conftest.c >&5
configure:2756: $? = 0
configure:2760: test -z
|| test ! -s conftest.err
configure:2763: $? = 0
configure:2766: test -s conftest.o
configure:2769: $? = 0
configure:2780: result: yes
configure:2734: checking for string.h
configure:2750: gcc -arch i386 -std=gnu99 -c -g -O2
-I/sw/include/proj -I/sw/include/gdal1 conftest.c >&5
configure:2756: $? = 0
configure:2760: test -z
|| test ! -s conftest.err
configure:2763: $? = 0
configure:2766: test -s conftest.o
configure:2769: $? = 0
configure:2780: result: yes
configure:2734: checking for memory.h
configure:2750: gcc -arch i386 -std=gnu99 -c -g -O2
-I/sw/include/proj -I/sw/include/gdal1 conftest.c >&5
configure:2756: $? = 0
configure:2760: test -z
|| test ! -s conftest.err
configure:2763: $? = 0
configure:2766: test -s conftest.o
configure:2769: $? = 0
configure:2780: result: yes
configure:2734: checking for strings.h
configure:2750: gcc -arch i386 -std=gnu99 -c -g -O2
-I/sw/include/proj -I/sw/include/gdal1 conftest.c >&5
configure:2756: $? = 0
configure:2760: test -z
|| test ! -s conftest.err
configure:2763: $? = 0
configure:2766: test -s conftest.o
configure:2769: $? = 0
configure:2780: result: yes
configure:2734: checking for inttypes.h
configure:2750: gcc -arch i386 -std=gnu99 -c -g -O2
-I/sw/include/proj -I/sw/include/gdal1 conftest.c >&5
configure:2756: $? = 0
configure:2760: test -z
|| test ! -s conftest.err
configure:2763: $? = 0
configure:2766: test -s conftest.o
configure:2769: $? = 0
configure:2780: result: yes
configure:2734: checking for stdint.h
configure:2750: gcc -arch i386 -std=gnu99 -c -g -O2
-I/sw/include/proj -I/sw/include/gdal1 conftest.c >&5
configure:2756: $? = 0
configure:2760: test -z
|| test ! -s conftest.err
configure:2763: $? = 0
configure:2766: test -s conftest.o
configure:2769: $? = 0
configure:2780: result: yes
configure:2734: checking for unistd.h
configure:2750: gcc -arch i386 -std=gnu99 -c -g -O2
-I/sw/include/proj -I/sw/include/gdal1 conftest.c >&5
configure:2756: $? = 0
configure:2760: test -z
|| test ! -s conftest.err
configure:2763: $? = 0
configure:2766: test -s conftest.o
configure:2769: $? = 0
configure:2780: result: yes
configure:2806: checking proj_api.h usability
configure:2818: gcc -arch i386 -std=gnu99 -c -g -O2
-I/sw/include/proj -I/sw/include/gdal1 conftest.c >&5
conftest.c:53:22: error: proj_api.h: No such file or directory
configure:2824: $? = 1
configure: failed program was:
| /* confdefs.h. */
|
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h. */
| #include <stdio.h>
| #if HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #if HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #if STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # if HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #if HAVE_STRING_H
| # if !STDC_HEADERS && HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #if HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #if HAVE_INTTYPES_H
| # include <inttypes.h>
| #else
| # if HAVE_STDINT_H
| # include <stdint.h>
| # endif
| #endif
| #if HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <proj_api.h>
configure:2847: result: no
configure:2851: checking proj_api.h presence
configure:2861: gcc -arch i386 -std=gnu99 -E -I/sw/include/proj
-I/sw/include/gdal1 conftest.c
conftest.c:19:22: error: proj_api.h: No such file or directory
configure:2867: $? = 1
configure: failed program was:
| /* confdefs.h. */
|
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h. */
| #include <proj_api.h>
configure:2887: result: no
configure:2922: checking for proj_api.h
configure:2929: result: no
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_c_compiler_gnu=yes
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_exeext=
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_proj_api_h=no
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_objext=o
ac_cv_prog_CPP='gcc -arch i386 -std=gnu99 -E'
ac_cv_prog_ac_ct_CC='gcc -arch i386 -std=gnu99'
ac_cv_prog_cc_g=yes
ac_cv_prog_cc_stdc=
ac_cv_prog_egrep='grep -E'
## ----------------- ##
## Output variables. ##
## ----------------- ##
CC='gcc -arch i386 -std=gnu99'
CFLAGS='-g -O2'
CPP='gcc -arch i386 -std=gnu99 -E'
CPPFLAGS=' -I/sw/include/proj -I/sw/include/gdal1'
DEFS=''
ECHO_C='ECHO_N=''
ECHO_T=''
EGREP='grep -E'
EXEEXT=''
GDAL_CONFIG='gdal-config'
LDFLAGS=''
LIBOBJS=''
LIBS=''
LTLIBOBJS=''
OBJEXT='o'
PACKAGE_BUGREPORT=''
PACKAGE_NAME=''
PACKAGE_STRING=''
PACKAGE_TARNAME=''
PACKAGE_VERSION=''
PATH_SEPARATOR=':'
PKG_CPPFLAGS='-I/sw/include/proj -I/sw/include/gdal1'
PKG_LIBS='-L/sw/lib -lgdal'
SHELL='/bin/sh'
ac_ct_CC='gcc -arch i386 -std=gnu99'
bindir='${exec_prefix}/bin'
build_alias=''
datadir='${prefix}/share'
exec_prefix='NONE'
host_alias=''
includedir='${prefix}/include'
infodir='${prefix}/info'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localstatedir='${prefix}/var'
mandir='${prefix}/man'
oldincludedir='/usr/include'
prefix='NONE'
program_transform_name='s,x,x,'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
#define HAVE_INTTYPES_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STDINT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRINGS_H 1
#define HAVE_STRING_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_UNISTD_H 1
#define PACKAGE_BUGREPORT ""
#define PACKAGE_NAME ""
#define PACKAGE_STRING ""
#define PACKAGE_TARNAME ""
#define PACKAGE_VERSION ""
#define STDC_HEADERS 1
configure: exit 1
On Thu, Jul 2, 2009 at 2:02 PM, Steve
Lianoglou<mailinglist.honeypot at gmail.com> wrote:
> Hi,
>
> On Jul 2, 2009, at 2:43 PM, stephen sefick wrote:
>
>> Where is the config.log?
>
> Isn't it in the directory you're trying to compile from?
>
> But also, here's another idea: I notice /sw/* and /opt/* in your include
> library paths, so I wonder if maybe there is an other gcc getting in your
> way which can't compile to different architecture targets, ie: the "-arch
> i386" stuff you see in the "checking for gcc" line here.
>
> If you type "which gcc", which one pops up? Is it the one in /usr/bin, or is
> there another installed via MacPorts of fink?
>
> Just curious,
> -steve
>
>>
>> On Thu, Jul 2, 2009 at 11:33 AM, Jan de Leeuw<deleeuw at stat.ucla.edu>
>> wrote:
>>>
>>> As the error message says: see config.log more more details,
>>> search for "cannot create". It's usually a linking problem,
>>> or a problem with include files, not a compiler problem per se.
>>>
>>> On Jul 2, 2009, at 08:47 , stephen sefick wrote:
>>>
>>>> sudo R CMD install --configure-args='--with-proj-include=/sw/bin/proj'
>>>> rgdal_0.6-9.tar.gz
>>>> * Installing to library
>>>> ‘/Library/Frameworks/R.framework/Resources/library’
>>>> * Installing *source* package ‘rgdal’ ...
>>>> gdal-config: gdal-config
>>>> checking for gcc... gcc -arch i386 -std=gnu99
>>>> checking for C compiler default output file name... configure: error:
>>>> C compiler cannot create executables
>>>> See `config.log' for more details.
>>>> ERROR: configuration failed for package ‘rgdal’
>>>> * Removing ‘/Library/Frameworks/R.framework/Resources/library/rgdal’
>>>>
>>>> there is a C compiler problem? I have XCode 3.1.2.
>>>>
>>>> Stephen Sefick
>>>>
>>>> On Thu, Jul 2, 2009 at 10:05 AM, stephen sefick<ssefick at gmail.com>
>>>> wrote:
>>>>>
>>>>> platform i386-apple-darwin8.11.1
>>>>> arch i386
>>>>> os darwin8.11.1
>>>>> system i386, darwin8.11.1
>>>>> status
>>>>> major 2
>>>>> minor 9.1
>>>>> year 2009
>>>>> month 06
>>>>> day 26
>>>>> svn rev 48839
>>>>> language R
>>>>> version.string R version 2.9.1 (2009-06-26)
>>>>>
>>>>> gdal-config, proj, and ogr are in my path. I type them at the shell
>>>>> prompt and they work. They were installed using fink so they are in
>>>>> the /sw/bin directory. The installation did not work without
>>>>> configuration flags and gave me the same error message that is at the
>>>>> end of the transcript, so I decided to tell R CMD install where proj
>>>>> was. Below is the transcript of my session:
>>>>>
>>>>> sudo R CMD install --configure-args='--with-proj=/sw/bin/proj'
>>>>> rgdal_0.6-9.tar.gz
>>>>> Password:
>>>>> * Installing to library
>>>>> ‘/Library/Frameworks/R.framework/Resources/library’
>>>>> * Installing *source* package ‘rgdal’ ...
>>>>> gdal-config: gdal-config
>>>>> checking for gcc... gcc -arch i386 -std=gnu99
>>>>> checking for C compiler default output file name... a.out
>>>>> checking whether the C compiler works... yes
>>>>> checking whether we are cross compiling... no
>>>>> checking for suffix of executables...
>>>>> checking for suffix of object files... o
>>>>> checking whether we are using the GNU C compiler... yes
>>>>> checking whether gcc -arch i386 -std=gnu99 accepts -g... yes
>>>>> checking for gcc -arch i386 -std=gnu99 option to accept ANSI C... none
>>>>> needed
>>>>> checking how to run the C preprocessor... gcc -arch i386 -std=gnu99 -E
>>>>> checking for egrep... grep -E
>>>>> checking for ANSI C header files... rm: conftest.dSYM: is a directory
>>>>> rm: conftest.dSYM: is a directory
>>>>> yes
>>>>> checking for sys/types.h... yes
>>>>> checking for sys/stat.h... yes
>>>>> checking for stdlib.h... yes
>>>>> checking for string.h... yes
>>>>> checking for memory.h... yes
>>>>> checking for strings.h... yes
>>>>> checking for inttypes.h... yes
>>>>> checking for stdint.h... yes
>>>>> checking for unistd.h... yes
>>>>> checking proj_api.h usability... no
>>>>> checking proj_api.h presence... no
>>>>> checking for proj_api.h... no
>>>>> Error: proj_api.h not found.
>>>>> If the PROJ.4 library is installed in a non-standard location,
>>>>> use --configure-args='--with-proj-include=/opt/local/include'
>>>>> for example, replacing /opt/local/* with appropriate values
>>>>> for your installation. If PROJ.4 is not installed, install it.
>>>>> ERROR: configuration failed for package ‘rgdal’
>>>>> * Removing ‘/Library/Frameworks/R.framework/Resources/library/rgdal’
>>>>>
>>>>> any help would be greatly appreciated.
>>>>
>>>> --
>>>> Stephen Sefick
>>>>
>>>> Let's not spend our time and resources thinking about things that are
>>>> so little or so large that all they really do for us is puff us up and
>>>> make us feel like gods. We are mammals, and have not exhausted the
>>>> annoying little problems of being mammals.
>>>>
>>>> -K. Mullis
>>>>
>>>> _______________________________________________
>>>> R-SIG-Mac mailing list
>>>> R-SIG-Mac at stat.math.ethz.ch
>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>
>>> ===
>>> Jan de Leeuw; Distinguished Professor and Chair, UCLA Department of
>>> Statistics;
>>> Director: UCLA Center for Environmental Statistics (CES);
>>> Editor: Journal of Multivariate Analysis, Journal of Statistical
>>> Software;
>>> US mail: 8125 Math Sciences Bldg, Box 951554, Los Angeles, CA 90095-1554
>>> phone (310)-825-9550; fax (310)-206-5658; email: deleeuw at stat.ucla.edu
>>> .mac: jdeleeuw ++++++ aim: deleeuwjan ++++++ skype: j_deleeuw
>>> homepages: http://gifi.stat.ucla.edu ++++++ http://www.cuddyvalley.org
>>>
>>> -------------------------------------------------------------------------------------------------
>>> No matter where you go, there you are. --- Buckaroo Banzai
>>> http://gifi.stat.ucla.edu/sounds/nomatter.au
>>>
>>> -------------------------------------------------------------------------------------------------
>>>
>>>
>>>
>>>
>>>
>>>
>>
>>
>>
>> --
>> Stephen Sefick
>>
>> Let's not spend our time and resources thinking about things that are
>> so little or so large that all they really do for us is puff us up and
>> make us feel like gods. We are mammals, and have not exhausted the
>> annoying little problems of being mammals.
>>
>> -K. Mullis
>>
>> _______________________________________________
>> R-SIG-Mac mailing list
>> R-SIG-Mac at stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
> --
> Steve Lianoglou
> Graduate Student: Physiology, Biophysics and Systems Biology
> Weill Medical College of Cornell University
>
> Contact Info: http://cbio.mskcc.org/~lianos/contact
>
>
>
>
--
Stephen Sefick
Let's not spend our time and resources thinking about things that are
so little or so large that all they really do for us is puff us up and
make us feel like gods. We are mammals, and have not exhausted the
annoying little problems of being mammals.
-K. Mullis
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