[R-SIG-Mac] JGR, JAva and Macintosh

[Simon Urbanek]

On Apr 27, 2009, at 9:58 , Simon Urbanek wrote:

>
> On Apr 27, 2009, at 9:42 , Beckmann Lars wrote:
>
>> Then the first error in the original message occurs:
>>
>> The error message after a double click on JGR.app is a popup- 
>> windows with following message:
>>
>> Cannot find JRI library
>>
>> Cannot find java/R interface (JRI) library (libjri.jnilib)
>> Please make sure you start JGR  by double-clicking the JGR
>> application
>>
>
> If you upgraded R or used a custom package path before, you'll have  
> to remove your JGR preferences
> rm ~/.JGRprefsrc
> and re-try. If that doesn't help, please run JGR from the command  
> line (Terminal) as follows and post the output:
> /Applications/JGR.app/Contents/MacOS/JGR
>

BTW: please use stats-rosuda-devel mailing list for JGR-related  
questions.
http://mailman.rz.uni-augsburg.de/mailman/listinfo/stats-rosuda-devel

Thanks,
Simon


>
>>
>>
>> ________________________________
>>
>> Von: r-sig-mac-bounces at stat.math.ethz.ch im Auftrag von Simon Urbanek
>> Gesendet: Mo 2009-04-27 15:24
>> An: Beckmann Lars
>> Cc: r-sig-mac at stat.math.ethz.ch
>> Betreff: Re: [R-SIG-Mac] JGR, JAva and Macintosh
>>
>>
>>
>>
>> On Apr 26, 2009, at 6:48 , Beckmann Lars wrote:
>>
>>> Some additional notes:
>>>
>>> It looks like a Java problem. The preinstalled version on the Mac
>>> was 1.5.0_16, but I switched to 1.6.0_07. Below are error messages  
>>> for
>>> library(JGR) and library(iplots)
>>>
>>
>> You cannot load JGR from within an R session due to Os X 10.5
>> limitation - you should use the launcher supplied on the JGR website.
>>
>> Cheers,
>> Simon
>>
>>
>>> # load JGR
>>>
>>>> library(JGR)
>>> Lade nötiges Paket: rJava
>>> Lade nötiges Paket: JavaGD
>>> Lade nötiges Paket: iplots
>>> Note: On Mac OS X we strongly recommend using iplots from within  
>>> JGR.
>>> Proceed at your own risk as iplots cannot resolve potential ev.loop
>>> deadlocks.
>>> 'Yes' is assumed for all dialogs as they cannot be shown without a
>>> deadlock,
>>> also ievent.wait() is disabled.
>>> Exception in thread "main" Error in .jnew("org/rosuda/iplots/
>>> Framework") :
>>> Failed to create object of class `org/rosuda/iplots/Framework'
>>> Zusätzlich: Warning message:
>>> In .jnew("org/rosuda/iplots/Framework") :
>>> NewObject("org/rosuda/iplots/Framework","()V",...) failed
>>> Fehler: Paket 'iplots' konnte nicht geladen werden
>>> java.lang.InternalError: Can't start the AWT because Java was
>>> started on the first thread.  Make sure StartOnFirstThread is not
>>> specified in your application's Info.plist or on the command line
>>>     at java.lang.ClassLoader$NativeLibrary.load(Native Method)
>>>     at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1822)
>>>     at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1723)
>>>     at java.lang.Runtime.loadLibrary0(Runtime.java:822)
>>>     at java.lang.System.loadLibrary(System.java:993)
>>>     at  
>>> sun.security.action.LoadLibraryAction.run(LoadLibraryAction.java:
>>> 50)
>>>     at java.security.AccessController.doPrivileged(Native Method)
>>>     at java.awt.Toolkit.loadLibraries(Toolkit.java:1509)
>>>     at java.awt.Toolkit.<clinit>(Toolkit.java:1530)
>>>     at java.awt.Color.<clinit>(Color.java:250)
>>>     at org.rosuda.ibase.Common.<clinit>(Common.java:47)
>>>     at org.rosuda.iplots.Framework.<init>(Framework.java:43)
>>>>
>>>
>>> # load iplots
>>>
>>>> library(iplots)
>>> Note: On Mac OS X we strongly recommend using iplots from within  
>>> JGR.
>>> Proceed at your own risk as iplots cannot resolve potential ev.loop
>>> deadlocks.
>>> 'Yes' is assumed for all dialogs as they cannot be shown without a
>>> deadlock,
>>> also ievent.wait() is disabled.
>>> Exception in thread "main" Error in .jnew("org/rosuda/iplots/
>>> Framework") :
>>> Failed to create object of class `org/rosuda/iplots/Framework'
>>> Zusätzlich: Warning message:
>>> In .jnew("org/rosuda/iplots/Framework") :
>>> NewObject("org/rosuda/iplots/Framework","()V",...) failed
>>> Fehler in library(iplots) : .First.lib fehlgeschlagen für 'iplots'
>>> java.lang.NoClassDefFoundError
>>>     at org.rosuda.iplots.Framework.<init>(Framework.java:43)
>>>>
>>>
>>>
>>>
>>> -----Ursprüngliche Nachricht-----
>>> Von: r-sig-mac-bounces at stat.math.ethz.ch im Auftrag von Beckmann  
>>> Lars
>>> Gesendet: Sa 2009-04-25 18:46
>>> An: r-sig-mac at stat.math.ethz.ch
>>> Betreff: [R-SIG-Mac] JGR, JAva and Macintosh
>>>
>>> Hey,
>>>
>>> I ahve a Mac book pro with Mac OS 10.5.6. Recently I installed
>>> Xtools, since then I cannot work with JGR. I reinstalled R (now
>>> 2.9.0) and rJava. The error message after a double click on  
>>> JGR.app is
>>>
>>>
>>> Cannot find JRI library
>>>
>>> Cannot find java/R interface (JRI) library (libjri.jnilib)
>>> Please make sure you start JGR  by double -clicking teh JGR
>>> application
>>>
>>>
>>> any help?
>>> Lars
>>>
>>> ----------------------------------
>>> German Cancer Research Center DKFZ Heidelberg, Germany
>>> Unit of Genetic Epidemiology
>>> Division of Cancer Epidemiology
>>> Im Neuenheimer Feld 280
>>> 69120 Heidelberg
>>> Phone  49-6221-422214
>>> Fax    49-6221-422203
>>> e-mail: l.beckmann at dkfz.de
>>>
>>> _______________________________________________
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>>>
>>> _______________________________________________
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>>>
>>
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