[R-SIG-Mac] Bus error while updating packages

Michael Kubovy kubovy at virginia.edu
Fri Feb 8 03:58:01 CET 2008


Can anyone suggest what I may be doing wrong?

I had issued the command update.packages(), after which I went through  
the usual dialog:

mixtools :
  Version 0.2.0 installed in /Library/Frameworks/R.framework/Resources/ 
library
  Version 0.3.0 available at http://lib.stat.cmu.edu/R/CRAN
Update (y/N/c)?  y
…
tsDyn :
  Version 0.5-7 installed in /Library/Frameworks/R.framework/Resources/ 
library
  Version 0.6-0 available at http://lib.stat.cmu.edu/R/CRAN
Update (y/N/c)?  y
trying URL 'http://lib.stat.cmu.edu/R/CRAN/bin/macosx/universal/contrib/2.6/mixtools_0.3.0.tgz'
Content type 'application/x-gzip' length 325712 bytes (318 Kb)
opened URL
==================================================
downloaded 318 Kb
…
trying URL 'http://lib.stat.cmu.edu/R/CRAN/bin/macosx/universal/contrib/2.6/tsDyn_0.6-0.tgz'
Content type 'application/x-gzip' length 519954 bytes (507 Kb)
opened URL
==================================================
downloaded 507 Kb


  *** caught bus error ***
address 0x20, cause 'non-existent physical address'

Traceback:
  1: unlink(instPath, recursive = TRUE)
  2: unpackPkg(foundpkgs[okp, 2], foundpkgs[okp, 1], lib,  
installWithVers)
  3: .install.macbinary(pkgs = pkgs, lib = lib, contriburl =  
contriburl,     method = method, available = available, destdir =  
destdir,     installWithVers = installWithVers, dependencies =  
dependencies)
  4: install.packages(update[instlib == l, "Package"], l, contriburl =  
contriburl,     method = method, available = available, ..., type =  
type)
  5: update.packages()

I am running
R version 2.6.1 (2007-11-26)
i386-apple-darwin8.10.1

locale:
en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base


_____________________________
Professor Michael Kubovy
University of Virginia
Department of Psychology
USPS:     P.O.Box 400400    Charlottesville, VA 22904-4400
Parcels:    Room 102        Gilmer Hall
         McCormick Road    Charlottesville, VA 22903
Office:    B011    +1-434-982-4729
Lab:        B019    +1-434-982-4751
Fax:        +1-434-982-4766
WWW:    http://www.people.virginia.edu/~mk9y/



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