[R-SIG-Mac] Some trouble installing RPVM

[Naji]

Thanks --e


I've copied the pvm3.h on the include directory
(R.framework/versions/2.5/Resources/include)

An now i'm getting

ld: warning can't open dynamic library:
/Developer/SDKs/MacOSX10.4u.sdk/Library/Frameworks/R.framework/Versions/2.5/
Resources/lib/libRblas.dylib referenced from:
/Library/Frameworks/R.framework/../R.framework/R (checking for undefined
symbols may be affected) (No such file or directory, errno = 2)

Thanks for your help


WARNING: ignoring environment value of R_HOME
* Installing *source* package 'rpvm' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
Check if PVM_ROOT is defined... no
Warning: PVM_ROOT not defined.
I'll try to build rpvm but you need set PVM_ROOT
before use pvm. See pvm_intro(1PVM)

Try to guess if pvm is installed somewhere ...
Found pvm: /Users/najinassar/pvm3
PVM_ROOT is /Users/najinassar/pvm3
PVM_ARCH is DARWIN
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking pvm3.h usability... yes
checking pvm3.h presence... yes
checking for pvm3.h... yes
checking for main in -lpvm3... no
Try to find libpvm3 ...
Found in /Users/najinassar/pvm3/lib/DARWIN
checking for pvmd... /Users/najinassar/pvm3/lib/pvmd
checking for pvmgs... /Users/najinassar/pvm3/bin/DARWIN/pvmgs
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating inst/pvmhosts
** libs
** arch - ppc
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99
-no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/ppc -I/include
-I/usr/local/include   -DSOCKADHASLEN -DNOREXEC
-DRSHCOMMAND=\"/usr/bin/rsh\" -DHASSTDLIB -DNEEDMENDIAN -DHASERRORVARS
-DFAKEXDRFLOAT -DSYSERRISCONST -I/usr/include/malloc
-I/System/Library/Frameworks/System.framework/Headers/bsd/sys -fPIC  -g -O2
-c rpvm_core.c -o rpvm_core.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99
-no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/ppc -I/include
-I/usr/local/include   -DSOCKADHASLEN -DNOREXEC
-DRSHCOMMAND=\"/usr/bin/rsh\" -DHASSTDLIB -DNEEDMENDIAN -DHASERRORVARS
-DFAKEXDRFLOAT -DSYSERRISCONST -I/usr/include/malloc
-I/System/Library/Frameworks/System.framework/Headers/bsd/sys -fPIC  -g -O2
-c rpvm_ser.c -o rpvm_ser.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99
-no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/ppc -I/include
-I/usr/local/include   -DSOCKADHASLEN -DNOREXEC
-DRSHCOMMAND=\"/usr/bin/rsh\" -DHASSTDLIB -DNEEDMENDIAN -DHASERRORVARS
-DFAKEXDRFLOAT -DSYSERRISCONST -I/usr/include/malloc
-I/System/Library/Frameworks/System.framework/Headers/bsd/sys -fPIC  -g -O2
-c utils.c -o utils.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99
-dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup
-single_module -multiply_defined suppress -L/usr/local/lib -o rpvm.so
rpvm_core.o rpvm_ser.o utils.o -L/Users/najinassar/pvm3/lib/DARWIN -lpvm3
-lgpvm3   -F/Library/Frameworks/R.framework/.. -framework R
ld: warning can't open dynamic library:
/Developer/SDKs/MacOSX10.4u.sdk/Library/Frameworks/R.framework/Versions/2.5/
Resources/lib/libRblas.dylib referenced from:
/Library/Frameworks/R.framework/../R.framework/R (checking for undefined
symbols may be affected) (No such file or directory, errno = 2)
Le 26/07/07 14:26, « elw at stderr.org » <elw at stderr.org> a écrit :

> 
> 
> 
> there are flags to tell R CMD build/install where to find headers and
> libraries.  you will need them, as your headers and libs are in
> nonstandard locations.  PVM_ROOT is insufficient.
> 
> --e
> 
> 
> 
> On Thu, 26 Jul 2007, Naji wrote:
> 
>> Date: Thu, 26 Jul 2007 13:55:18 +0200
>> From: Naji <nassar at noos.fr>
>> To: r-sig-mac at stat.math.ethz.ch
>> Subject: [R-SIG-Mac] Some trouble installing RPVM
>> 
>> Hi...
>> 
>> 
>> 
>> I downloaded RPVM sources from CRAN.. Ive encountered a lot a error
>> messages..
>> Thanks for your help
>> 
>> WARNING: ignoring environment value of R_HOME
>> * Installing *source* package 'rpvm' ...
>> checking for gcc... gcc
>> checking for C compiler default output file name... a.out
>> checking whether the C compiler works... yes
>> checking whether we are cross compiling... no
>> checking for suffix of executables...
>> checking for suffix of object files... o
>> checking whether we are using the GNU C compiler... yes
>> checking whether gcc accepts -g... yes
>> checking for gcc option to accept ANSI C... none needed
>> Check if PVM_ROOT is defined... no
>> Warning: PVM_ROOT not defined.
>> I'll try to build rpvm but you need set PVM_ROOT
>> before use pvm. See pvm_intro(1PVM)
>> 
>> Try to guess if pvm is installed somewhere ...
>> Found pvm: /Users/najinassar/pvm3
>> PVM_ROOT is /Users/najinassar/pvm3
>> PVM_ARCH is DARWIN
>> checking how to run the C preprocessor... gcc -E
>> checking for egrep... grep -E
>> checking for ANSI C header files... yes
>> checking for sys/types.h... yes
>> checking for sys/stat.h... yes
>> checking for stdlib.h... yes
>> checking for string.h... yes
>> checking for memory.h... yes
>> checking for strings.h... yes
>> checking for inttypes.h... yes
>> checking for stdint.h... yes
>> checking for unistd.h... yes
>> checking pvm3.h usability... yes
>> checking pvm3.h presence... yes
>> checking for pvm3.h... yes
>> checking for main in -lpvm3... no
>> Try to find libpvm3 ...
>> Found in /Users/najinassar/pvm3/lib/DARWIN
>> checking for pvmd... /Users/najinassar/pvm3/lib/pvmd
>> checking for pvmgs... /Users/najinassar/pvm3/bin/DARWIN/pvmgs
>> configure: creating ./config.status
>> config.status: creating src/Makevars
>> config.status: creating inst/pvmhosts
>> ** libs
>> ** arch - ppc
>> 
>> gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99
>> -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/ppc -I/include
>> -I/usr/local/include   -DSOCKADHASLEN -DNOREXEC
>> -DRSHCOMMAND=\"/usr/bin/rsh\" -DHASSTDLIB -DNEEDMENDIAN -DHASERRORVARS
>> -DFAKEXDRFLOAT -DSYSERRISCONST -I/usr/include/malloc
>> -I/System/Library/Frameworks/System.framework/Headers/bsd/sys -fPIC  -g -O2
>> -c rpvm_core.c -o rpvm_core.o
>> ** Removing
>> '/Library/Frameworks/R.framework/Versions/2.5/Resources/library/rpvm'
>> ** Restoring previous
>> '/Library/Frameworks/R.framework/Versions/2.5/Resources/library/rpvm'
>> rpvm_core.c:6:18: error: pvm3.h: No such file or directory
>> rpvm_core.c: In function Œrpvm_chkerror¹:
>> 
>> 
>> I've installed PVM (running quite fine under my terminal_bash
>> 
>> MacG5:~ najinassar$ pvm
>> pvm> quit
>> quit
>> pvmd still running.
>> 
>> And PVM_ROOT is recognized
>> 
>> MacG5:~ najinassar$ $PVM_ROOT
>> -bash: /Users/najinassar/pvm3: is a directory
>> 
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