[R-SIG-Mac] Bioconductor - reposTools errors

[Jan de Leeuw]

start with "sudo R"

On Friday, Jun 6, 2003, at 09:48 US/Pacific, Dennis A. Wolf wrote:

> Thanks Jan for the quick response! The library seemed to load okay,  
> however I got a couple of warnings:
>
> Warning messages:
> 1: NAs introduced by coercion
> 2: Incorrect permissions to edit package database,  
> /usr/local/lib/R/library/liblisting.Rda in: save.locLib(locLibDf,  
> lib[i])
>
> Should I be concerned about them?
>
> Thanks again!
>
> Dennis A. Wolf, Ph.D.
> Computer Sciences and Mathematics Division
> Oak Ridge National Laboratory
> POB 2008, Building 6011, MS 6418
> Oak Ridge, TN  37831-6418
>
> phone: (865) 574-6326
> fax:   (865) 576-3513
> email: wolfda at ornl.gov
>
> On Friday, Jun 6, 2003, at 12:29 US/Eastern, Jan de Leeuw wrote:
>
>> remove
>>
>> /usr/local/lib/R/library/R.css
>> /usr/local/lib/R/library/liblisting.Rda
>>
>> and try again
>>
>> On Friday, Jun 6, 2003, at 08:52 US/Pacific, Dennis A. Wolf wrote:
>>
>>> I am trying to use the Bioconductor package included in the R-1.7.0  
>>> package post 05-19-03 on http://gifi.stat.ucla.edu/pub but am  
>>> getting the following error:
>>>
>>> > library(Biobase)
>>> Welcome to Bioconductor
>>>          Vignettes contain introductory material.  To view,
>>>          simply type: openVignette()
>>>          For details on reading vignettes, see
>>>          the openVignette help page.
>>> Creating a new generic function for "summary" in package
>>> reposTools
>>>
>>> Synching your local package management information ...
>>> Error in if (e1[i] != e2[i]) return(TRUE) :
>>>         missing value where TRUE/FALSE needed
>>> Error in firstlib(which.lib.loc, package) :
>>>         Package reposTools required
>>> Error in library(Biobase) : .First.lib failed
>>>
>>> Can anyone shed some light on what is going wrong? Thanks!
>>>
>>>
>>> Dennis A. Wolf, Ph.D.
>>> Computer Sciences and Mathematics Division
>>> Oak Ridge National Laboratory
>>> POB 2008, Building 6011, MS 6418
>>> Oak Ridge, TN  37831-6418
>>>
>>> phone: (865) 574-6326
>>> fax:   (865) 576-3513
>>> email: wolfda at ornl.gov
>>>
>>> _______________________________________________
>>> R-SIG-Mac mailing list
>>> R-SIG-Mac at stat.math.ethz.ch
>>> https://www.stat.math.ethz.ch/mailman/listinfo/r-sig-mac
>>>
>>>
>> ===
>> Jan de Leeuw; Professor and Chair, UCLA Department of Statistics;
>> Editor: Journal of Multivariate Analysis, Journal of Statistical  
>> Software
>> US mail: 9432 Boelter Hall, Box 951554, Los Angeles, CA 90095-1554
>> phone (310)-825-9550;  fax (310)-206-5658;  email:  
>> deleeuw at stat.ucla.edu
>> homepage: http://gifi.stat.ucla.edu
>>   
>> ---------------------------------------------------------------------- 
>> ---------------------------
>>           No matter where you go, there you are. --- Buckaroo Banzai
>>                    http://gifi.stat.ucla.edu/sounds/nomatter.au
>>   
>> ---------------------------------------------------------------------- 
>> ---------------------------
>>
>>
>
>
===
Jan de Leeuw; Professor and Chair, UCLA Department of Statistics;
Editor: Journal of Multivariate Analysis, Journal of Statistical  
Software
US mail: 9432 Boelter Hall, Box 951554, Los Angeles, CA 90095-1554
phone (310)-825-9550;  fax (310)-206-5658;  email: deleeuw at stat.ucla.edu
homepage: http://gifi.stat.ucla.edu
   
------------------------------------------------------------------------ 
-------------------------
           No matter where you go, there you are. --- Buckaroo Banzai
                    http://gifi.stat.ucla.edu/sounds/nomatter.au