[R-SIG-Mac] Bioconductor - reposTools errors

[Dennis A. Wolf]

That did it, thanks!

--Dennis

On Friday, Jun 6, 2003, at 12:57 US/Eastern, Jan de Leeuw wrote:

> start with "sudo R"
>
> On Friday, Jun 6, 2003, at 09:48 US/Pacific, Dennis A. Wolf wrote:
>
>> Thanks Jan for the quick response! The library seemed to load okay,  
>> however I got a couple of warnings:
>>
>> Warning messages:
>> 1: NAs introduced by coercion
>> 2: Incorrect permissions to edit package database,  
>> /usr/local/lib/R/library/liblisting.Rda in: save.locLib(locLibDf,  
>> lib[i])
>>
>> Should I be concerned about them?
>>
>> Thanks again!
>>
>> Dennis A. Wolf, Ph.D.
>> Computer Sciences and Mathematics Division
>> Oak Ridge National Laboratory
>> POB 2008, Building 6011, MS 6418
>> Oak Ridge, TN  37831-6418
>>
>> phone: (865) 574-6326
>> fax:   (865) 576-3513
>> email: wolfda at ornl.gov
>>
>> On Friday, Jun 6, 2003, at 12:29 US/Eastern, Jan de Leeuw wrote:
>>
>>> remove
>>>
>>> /usr/local/lib/R/library/R.css
>>> /usr/local/lib/R/library/liblisting.Rda
>>>
>>> and try again
>>>
>>> On Friday, Jun 6, 2003, at 08:52 US/Pacific, Dennis A. Wolf wrote:
>>>
>>>> I am trying to use the Bioconductor package included in the R-1.7.0  
>>>> package post 05-19-03 on http://gifi.stat.ucla.edu/pub but am  
>>>> getting the following error:
>>>>
>>>> > library(Biobase)
>>>> Welcome to Bioconductor
>>>>          Vignettes contain introductory material.  To view,
>>>>          simply type: openVignette()
>>>>          For details on reading vignettes, see
>>>>          the openVignette help page.
>>>> Creating a new generic function for "summary" in package
>>>> reposTools
>>>>
>>>> Synching your local package management information ...
>>>> Error in if (e1[i] != e2[i]) return(TRUE) :
>>>>         missing value where TRUE/FALSE needed
>>>> Error in firstlib(which.lib.loc, package) :
>>>>         Package reposTools required
>>>> Error in library(Biobase) : .First.lib failed
>>>>
>>>> Can anyone shed some light on what is going wrong? Thanks!
>>>>
>>>>
>>>> Dennis A. Wolf, Ph.D.
>>>> Computer Sciences and Mathematics Division
>>>> Oak Ridge National Laboratory
>>>> POB 2008, Building 6011, MS 6418
>>>> Oak Ridge, TN  37831-6418
>>>>
>>>> phone: (865) 574-6326
>>>> fax:   (865) 576-3513
>>>> email: wolfda at ornl.gov
>>>>
>>>> _______________________________________________
>>>> R-SIG-Mac mailing list
>>>> R-SIG-Mac at stat.math.ethz.ch
>>>> https://www.stat.math.ethz.ch/mailman/listinfo/r-sig-mac
>>>>
>>>>
>>> ===
>>> Jan de Leeuw; Professor and Chair, UCLA Department of Statistics;
>>> Editor: Journal of Multivariate Analysis, Journal of Statistical  
>>> Software
>>> US mail: 9432 Boelter Hall, Box 951554, Los Angeles, CA 90095-1554
>>> phone (310)-825-9550;  fax (310)-206-5658;  email:  
>>> deleeuw at stat.ucla.edu
>>> homepage: http://gifi.stat.ucla.edu
>>>   
>>> --------------------------------------------------------------------- 
>>> ----------------------------
>>>           No matter where you go, there you are. --- Buckaroo Banzai
>>>                    http://gifi.stat.ucla.edu/sounds/nomatter.au
>>>   
>>> --------------------------------------------------------------------- 
>>> ----------------------------
>>>
>>>
>>
>>
> ===
> Jan de Leeuw; Professor and Chair, UCLA Department of Statistics;
> Editor: Journal of Multivariate Analysis, Journal of Statistical  
> Software
> US mail: 9432 Boelter Hall, Box 951554, Los Angeles, CA 90095-1554
> phone (310)-825-9550;  fax (310)-206-5658;  email:  
> deleeuw at stat.ucla.edu
> homepage: http://gifi.stat.ucla.edu
>   
> ----------------------------------------------------------------------- 
> --------------------------
>           No matter where you go, there you are. --- Buckaroo Banzai
>                    http://gifi.stat.ucla.edu/sounds/nomatter.au
>   
> ----------------------------------------------------------------------- 
> --------------------------
>