[R-sig-hpc] Rmpi does only finds only master

[Markus Schmidberger]

Hi Rainer,

how do you start R?

Try this:
orterun -n 1 --hostfile YOUR_HOSTFILE R --no-save

And have a look to Dirk's tutorial of the UseR2008:
http://www.statistik.uni-dortmund.de/useR-2008/tutorials/useR2008introhighperfR.pdf

Best
Markus

Rainer M Krug wrote:
> Sorry - forgot the version and platform info:
> 
>> version
>                _
> platform       x86_64-unknown-linux-gnu
> arch           x86_64
> os             linux-gnu
> system         x86_64, linux-gnu
> status
> major          2
> minor          7.2
> year           2008
> month          08
> day            25
> svn rev        46428
> language       R
> version.string R version 2.7.2 (2008-08-25)
> 
> Open MPI 1.2.5
> 
> On Wed, Nov 26, 2008 at 10:19 AM, Rainer M Krug <r.m.krug at gmail.com> wrote:
>> Hi
>>
>> I am trying to use Rmpi (and I managed to install it against openMPI
>> and it is loading), but it sees only the master, not the nodes of the
>> cluster.
>> MPI is working, as a c program successfully communicates with all nodes.
>>
>> Thanks for suggestions,
>>
>> Rainer
>>
>> --
>> Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
>> Biology, UCT), Dipl. Phys. (Germany)
>>
>> Centre of Excellence for Invasion Biology
>> Faculty of Science
>> Natural Sciences Building
>> Private Bag X1
>> University of Stellenbosch
>> Matieland 7602
>> South Africa
>>
> 
> 
> 


-- 
Dipl.-Tech. Math. Markus Schmidberger

Ludwig-Maximilians-Universität München
IBE - Institut für medizinische Informationsverarbeitung,
Biometrie und Epidemiologie
Marchioninistr. 15, D-81377 Muenchen
URL: http://www.ibe.med.uni-muenchen.de
Mail: Markus.Schmidberger [at] ibe.med.uni-muenchen.de
Tel: +49 (089) 7095 - 4599