[R-sig-Geo] R crashes when reading geopackage files with st_read (sf package) in macOS

[Manuel Spínola]

Thank you very much Roger.

I reinstalled the sf and rgdal packages from binaries and the problem
persisted.

To install GDAL, PROJ and GEOS i followed the instructions in the sf github
site.

Yes, the problem is with several geopackages files.  I see the problem also
with st_write when working trying to save a file in geopackage format.

I can read the files without problem with readOGR.

Manuel

El mié, 31 mar 2021 a las 10:26, Roger Bivand (<Roger.Bivand using nhh.no>)
escribió:

> Please refer to the associated sf issue on github:
> https://github.com/r-spatial/sf/issues/1606 for completeness. Please
> confirm that you are not using the MacOS sf CRAN binary package, but have
> installed GDAL, PROJ and GEOS yourself. Please also confirm that you see
> the same error with every GPKG file.
>
> --
> Roger Bivand
> Norwegian School of Economics
> Postboks 3490 Ytre Sandviken, 5045 Bergen, Norway
> Roger.Bivand using nhh.no
>
>
> ________________________________________
> Fra: R-sig-Geo <r-sig-geo-bounces using r-project.org> på vegne av Manuel
> Spínola <mspinola10 using gmail.com>
> Sendt: onsdag 31. mars 2021 17.55
> Til: r-sig-geo
> Emne: [R-sig-Geo] R crashes when reading geopackage files with st_read (sf
> package) in macOS
>
> Dear list members,
>
> When reading geopackages files with st_read (sf package) RStudio crashes (R
> session aborted) in macOS.  Any suggestions to fix this problem?
>
> Should I ask this question to the macOS group (r-sig-mac)?
>
> library(sf)
> Linking to GEOS 3.9.0, GDAL 3.2.1, PROJ 7.2.1
>
>
> library(spData)
>
>
> world = st_read(system.file("shapes/world.gpkg", package = "spData"))
>
>
>
>
> --
> *Manuel Spínola, Ph.D.*
> Instituto Internacional en Conservación y Manejo de Vida Silvestre
> Universidad Nacional
> Apartado 1350-3000
> Heredia
> COSTA RICA
> mspinola using una.cr <mspinola using una.ac.cr>
> mspinola10 using gmail.com
> Teléfono: (506) 8706 - 4662
> Personal website: Lobito de río <
> https://sites.google.com/site/lobitoderio/>
> Institutional website: ICOMVIS <http://www.icomvis.una.ac.cr/>
>
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>
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-- 
*Manuel Spínola, Ph.D.*
Instituto Internacional en Conservación y Manejo de Vida Silvestre
Universidad Nacional
Apartado 1350-3000
Heredia
COSTA RICA
mspinola using una.cr <mspinola using una.ac.cr>
mspinola10 using gmail.com
Teléfono: (506) 8706 - 4662
Personal website: Lobito de río <https://sites.google.com/site/lobitoderio/>
Institutional website: ICOMVIS <http://www.icomvis.una.ac.cr/>

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