[R-sig-Geo] Segmentation fault

[Roger Bivand]

On Mon, 28 Oct 2019, Eduardo Diez wrote:

> Hi everyone.
> I'm having problems running spatial processes in a domino machine. I

Please raise an issue on https://github.com/r-spatial/sf/issues, giving 
much more detail about your installation (domino is unknown to everybody 
but yourself, duckduckgo says: "Domino Machine manufactures blow out 
preventers, stuffing boxes, and API products"). Likely cause - failed 
installation of lwgeom, or multiple installs of external software. Avoid 
posting HTML.

Roger

> created a new environment with updated spatial packages but I'm unable to
> run simple tasks. Below an example and some information:
>
>> library(sf)Linking to GEOS 3.6.2, GDAL 2.4.2, PROJ 4.9.3> sessionInfo()
> R version 3.6.1 (2019-07-05)
> Platform: x86_64-pc-linux-gnu (64-bit)
> Running under: Ubuntu 18.04.3 LTS
>
> Matrix products: default
> BLAS:   /usr/lib/x86_64-linux-gnu/atlas/libblas.so.3.10.3
> LAPACK: /usr/lib/x86_64-linux-gnu/atlas/liblapack.so.3.10.3
>
> locale:
> [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
> [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
> [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
> [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
> [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] sf_0.8-0
>
> loaded via a namespace (and not attached):
> [1] compiler_3.6.1     magrittr_1.5       class_7.3-15       tools_3.6.1
> [5] DBI_1.0.0          units_0.6-5        Rcpp_1.0.2         KernSmooth_2.23-16
> [9] grid_3.6.1         e1071_1.7-2        classInt_0.4-2
>> sf_extSoftVersion()
>          GEOS           GDAL         proj.4 GDAL_with_GEOS     USE_PROJ_H
>       "3.6.2"        "2.4.2"        "4.9.3"         "true"        "false"
>> nc = st_read(system.file("shape/nc.shp", package="sf"))
> Reading layer `nc' from data source
> `/usr/local/lib/R/site-library/sf/shape/nc.shp' using driver `ESRI
> Shapefile'
> Simple feature collection with 100 features and 14 fields
> geometry type:  MULTIPOLYGON
> dimension:      XY
> bbox:           xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965
> epsg (SRID):    4267
> proj4string:    +proj=longlat +datum=NAD27 +no_defs
>> asd <- st_area(nc[1,]) # area from long/lat
>
>
> *** caught segfault ***
> address (nil), cause 'unknown'
> Traceback:
> 1: CPL_crs_parameters(x$proj4string)
> 2: structure(CPL_crs_parameters(x$proj4string), names =
> c("SemiMajor",     "SemiMinor", "InvFlattening", "units_gdal",
> "IsVertical",     "WktPretty", "Wkt"))
> 3: crs_parameters(crs) 4: st_crs.sfc(st_geometry(x), parameters = TRUE)
> 5: st_crs(st_geometry(x), parameters = TRUE)
> 6: lwgeom::st_geod_area(x)
> 7: st_area.sfc(st_geometry(x, ...))
> 8: st_area(st_geometry(x, ...))
> 9: st_area.sf(nc[1, ])
> 10: st_area(nc[1, ])
> An irrecoverable exception occurred. R is aborting now ...Segmentation
> fault (core dumped)
>
>
> Thanks in advance
>
> Best,
>
> Edu
>
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>
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-- 
Roger Bivand
Department of Economics, Norwegian School of Economics,
Helleveien 30, N-5045 Bergen, Norway.
voice: +47 55 95 93 55; e-mail: Roger.Bivand using nhh.no
https://orcid.org/0000-0003-2392-6140
https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en