[R-sig-Geo] Segmentation fault

[Eduardo Diez]

Roger,
Yes sorry about the confusion. Domino is a company (dominodatalab.com) that
offers a an environment for data science. It's based on docker images. On
one of those images I installed sf and lwgeom. What information should I
get from the image that helps identify the source of the problem?

Thanks,
Best

El mar., 29 oct. 2019 05:54, Roger Bivand <Roger.Bivand using nhh.no> escribió:

> On Mon, 28 Oct 2019, Eduardo Diez wrote:
>
> > Hi everyone.
> > I'm having problems running spatial processes in a domino machine. I
>
> Please raise an issue on https://github.com/r-spatial/sf/issues, giving
> much more detail about your installation (domino is unknown to everybody
> but yourself, duckduckgo says: "Domino Machine manufactures blow out
> preventers, stuffing boxes, and API products"). Likely cause - failed
> installation of lwgeom, or multiple installs of external software. Avoid
> posting HTML.
>
> Roger
>
> > created a new environment with updated spatial packages but I'm unable to
> > run simple tasks. Below an example and some information:
> >
> >> library(sf)Linking to GEOS 3.6.2, GDAL 2.4.2, PROJ 4.9.3> sessionInfo()
> > R version 3.6.1 (2019-07-05)
> > Platform: x86_64-pc-linux-gnu (64-bit)
> > Running under: Ubuntu 18.04.3 LTS
> >
> > Matrix products: default
> > BLAS:   /usr/lib/x86_64-linux-gnu/atlas/libblas.so.3.10.3
> > LAPACK: /usr/lib/x86_64-linux-gnu/atlas/liblapack.so.3.10.3
> >
> > locale:
> > [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
> > [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
> > [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
> > [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
> > [9] LC_ADDRESS=C               LC_TELEPHONE=C
> > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
> >
> > attached base packages:
> > [1] stats     graphics  grDevices utils     datasets  methods   base
> >
> > other attached packages:
> > [1] sf_0.8-0
> >
> > loaded via a namespace (and not attached):
> > [1] compiler_3.6.1     magrittr_1.5       class_7.3-15       tools_3.6.1
> > [5] DBI_1.0.0          units_0.6-5        Rcpp_1.0.2
>  KernSmooth_2.23-16
> > [9] grid_3.6.1         e1071_1.7-2        classInt_0.4-2
> >> sf_extSoftVersion()
> >          GEOS           GDAL         proj.4 GDAL_with_GEOS     USE_PROJ_H
> >       "3.6.2"        "2.4.2"        "4.9.3"         "true"        "false"
> >> nc = st_read(system.file("shape/nc.shp", package="sf"))
> > Reading layer `nc' from data source
> > `/usr/local/lib/R/site-library/sf/shape/nc.shp' using driver `ESRI
> > Shapefile'
> > Simple feature collection with 100 features and 14 fields
> > geometry type:  MULTIPOLYGON
> > dimension:      XY
> > bbox:           xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax:
> 36.58965
> > epsg (SRID):    4267
> > proj4string:    +proj=longlat +datum=NAD27 +no_defs
> >> asd <- st_area(nc[1,]) # area from long/lat
> >
> >
> > *** caught segfault ***
> > address (nil), cause 'unknown'
> > Traceback:
> > 1: CPL_crs_parameters(x$proj4string)
> > 2: structure(CPL_crs_parameters(x$proj4string), names =
> > c("SemiMajor",     "SemiMinor", "InvFlattening", "units_gdal",
> > "IsVertical",     "WktPretty", "Wkt"))
> > 3: crs_parameters(crs) 4: st_crs.sfc(st_geometry(x), parameters = TRUE)
> > 5: st_crs(st_geometry(x), parameters = TRUE)
> > 6: lwgeom::st_geod_area(x)
> > 7: st_area.sfc(st_geometry(x, ...))
> > 8: st_area(st_geometry(x, ...))
> > 9: st_area.sf(nc[1, ])
> > 10: st_area(nc[1, ])
> > An irrecoverable exception occurred. R is aborting now ...Segmentation
> > fault (core dumped)
> >
> >
> > Thanks in advance
> >
> > Best,
> >
> > Edu
> >
> >       [[alternative HTML version deleted]]
> >
> > _______________________________________________
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> > R-sig-Geo using r-project.org
> > https://stat.ethz.ch/mailman/listinfo/r-sig-geo
> >
>
> --
> Roger Bivand
> Department of Economics, Norwegian School of Economics,
> Helleveien 30, N-5045 Bergen, Norway.
> voice: +47 55 95 93 55; e-mail: Roger.Bivand using nhh.no
> https://orcid.org/0000-0003-2392-6140
> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
>

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