[R-sig-Geo] imaging geoRglm binomial krig
Ken Nussear
knussear at mac.com
Wed Mar 4 20:07:16 CET 2009
Hi
Wondering if anyone has had success imaging a krige produced using
geoRglm?
The dataset has 3467 locations....
Here is the code used to build the krige and attempted image.
itdsglm1 <- trend.spatial(~TRAN_LNTH + Maxent + HWYS_Dist2 + MDEP +
pop, WMgeo.Sign)
itlsglm1 <- trend.spatial(~TRAN_LNTH + Maxent + HWYS_Dist2 + MDEP +
pop, WMgeo.kriglocs)
kmod <- model.glm.control(trend.d = itdsglm1, trend.l = itlsglm1,
cov.model = "exponential")
kprior <- prior.glm.control(beta.prior = "flat", sigmasq.prior =
"fixed", sigmasq= 0.0307, phi.prior = "fixed", phi = 7748,
phi.discrete = NULL, tausq.rel = 5.276)
bkcontrl <- mcmc.control(S.scale = .07, thin=40, phi.start= 7748,
phi.scale = .2, burn.in=10)
kgout <- output.glm.control(sim.posterior=T, sim.predict=T,
keep.mcmc.sim=T, inference=T, messages=T, quantile=c(0.25,0.5,0.975))
bkb <- binom.krige.bayes(WMgeo.Sign, locations = WMgeo.kriglocs
$coords, model= kmod, mcmc.input= bkcontrl, prior=kprior)
image(bkb, locations=WMgeo.kriglocs$coords,
values.to.plot='simulation', number.col=1, messates=T)
image.glm.krige.bayes(bkb, locations=WMgeo.kriglocs$coords,
values.to.plot=c("median"), number.col=1, coords.data=WMgeo.kriglocs
$coords, x.leg=c(410312,561312), y.leg=c(3822651,3920651), messages=T)
I get the following errors and I can't figure out what it wants....
mapping the medians of the predictive distribution
Error in image.default(x = c(410311.919949, 411311.919949,
412311.919949, :
dimensions of z are not length(x)(-1) times length(y)(-1)
In addition: Warning messages:
1: In if (coords.data) coords.data <- eval(attr(x, "data.locations")) :
the condition has length > 1 and only the first element will be used
2: In matrix(values.loc, ncol = ny) :
data length [3467] is not a sub-multiple or multiple of the number
of rows [36]
Ken
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