[R-sig-genetics] genind2hierfstat

[Jombart, Thibaut]

Hi Libby, 

yes, it has been removed from adegenet and internalized in hierfstat. I think the idea is that ultimately all procedures in hierfstat will work directly with genind objects, so conversion will not be needed any more. 

For now, we still cheat, and use genind2hierfstat inside hierfstat. This function is hidden (.genind2hierfstat), and not exported. To access it, you need:

hierfstat:::.genind2hierfstat

(with the current devel of hierfstat)

Best
Thibaut

==============================
Dr Thibaut Jombart
MRC Centre for Outbreak Analysis and Modelling
Department of Infectious Disease Epidemiology
Imperial College - School of Public Health
Norfolk Place, London W2 1PG, UK
Tel. : 0044 (0)20 7594 3658
http://sites.google.com/site/thibautjombart/
http://sites.google.com/site/therepiproject/
http://adegenet.r-forge.r-project.org/
Twitter: @thibautjombart



________________________________________
From: R-sig-genetics [r-sig-genetics-bounces at r-project.org] on behalf of Libby Liggins [libbyliggins at gmail.com]
Sent: 15 July 2015 20:18
To: r-sig-genetics at r-project.org
Subject: [R-sig-genetics] genind2hierfstat

Hi Thibaut and Jerome -

The interoperability that you are building between your packages is
fantastic! But, I am having trouble with the genind2hierfstat function. It
doesn't seem to exist in either adegenet 2.0 or the development version of
hierfstat. I apologise if I missing something.

Thanks,
Libby.

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