[R-pkg-devel] Spelling of PDB in Package Description

[Leonard Mada]

Dear Uwe,


I found out what is going on. There is an example:

## Write the pdb object in file "Rpdb.pdb" into the current directory
write.pdb(pdb, file = "Rpdb.pdb")


The example was present in the previous version as well. So I did not 
thought about it. I do not know how to handle this: although the example 
should probably remain.


Sincerely,


Leonard


On 9/15/2023 12:27 AM, Uwe Ligges wrote:
> The spellng is fine and not a problem.
>
> For
> * checking for non-standard things in the check directory ... NOTE
> Found the following files/directories:
>   ‘Rpdb.pdb’
> You need to move this to ./inst or a subdirectory or, if data, 
> consider ./extdata See Writing R Extensions.
>
> Best,
> Uwe Ligges
>
>
> On 14.09.2023 22:06, Avraham Adler wrote:
>> Regarding PDB, in Rd format it’s best to wrap that in an \acronym{} 
>> tag. See section 2.3 of 
>> https://cran.r-project.org/doc/manuals/R-exts.html#Marking-text
>>
>> Avi
>>
>> Sent from my iPhone
>>
>>> On Sep 14, 2023, at 3:40 PM, Leonard Mada via R-package-devel 
>>> <r-package-devel using r-project.org> wrote:
>>>
>>> Dear List Members,
>>>
>>> After resubmitting the updated version of the Rpdb package (2.3.1), 
>>> the following Notes were generated:
>>>
>>> 1.) Spelling PDB
>>> https://win-builder.r-project.org/incoming_pretest/Rpdb_2.3.1_20230914_173458/Windows/00check.log 
>>>
>>> https://win-builder.r-project.org/incoming_pretest/Rpdb_2.3.1_20230914_173458/Debian/00check.log 
>>>
>>>
>>> The PDB stands for Protein Data Bank:
>>> http://www.wwpdb.org/documentation/file-format-content/format33/v3.3.html 
>>>
>>>
>>> It should be the correct spelling (and was the same in the previous 
>>> versions of the package).
>>>
>>> 2.)  Small Sample PDB Files
>>> * checking for non-standard things in the check directory ...
>>> NOTE Found the following files/directories: ‘Rpdb.pdb’
>>>
>>> There is a directory with 3 very small sample pdb-files. The 
>>> directory was also present in the previous version.
>>>
>>> How should I proceed? Or did I miss something?
>>>
>>>
>>> Sincerely,
>>>
>>>
>>> Leonard
>>>
>>> ______________________________________________
>>> R-package-devel using r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>>
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>>
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