[R-pkg-devel] submitting package update failed, since old version out of date (?)

[Gábor Csárdi]

I think they are this:

* checking CRAN incoming feasibility ... NOTE
...

and this:

* checking examples ... [76s/77s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
ordPens-package 54.112  0.044  54.158
ordPCA          18.377  0.004  18.382

G.

On Tue, Aug 17, 2021 at 3:38 PM Aisouda Hoshiyar
<aisouda.hoshiyar using hsu-hh.de> wrote:
>
> The CRAN (pretest) email states:
>
> package ordPens_1.0.0.tar.gz does not pass the incoming checks automatically, please see the following pre-tests:
> Debian: <https://win-builder.r-project.org/incoming_pretest/ordPens_1.0.0_20210817_114846/Debian/00check.log <https://win-builder.r-project.org/incoming_pretest/ordPens_1.0.0_20210817_114846/Debian/00check.log>>
> Status: 2 NOTEs
>
> Last released version's CRAN status: NOTE: 13
> See: <https://CRAN.R-project.org/web/checks/check_results_ordPens.html <https://cran.r-project.org/web/checks/check_results_ordPens.html>>
>
> Please fix all problems and resubmit a fixed version via the webform.
> If you are fairly certain the rejection is a false positive, please reply-all to this message and explain.
>
> I really don’t understand how else to fix (and what to fix). These are out of date problems of version 0.3-1, which are not relevant any more in version 1.0.0
> Version 1.0.0 exactly was a fix to those.
>
> Do you think I can reply-all & explain that this must be a false-positive?
>
> Best
> Aisouda
>
>
>
> > Am 17.08.2021 um 15:22 schrieb Georgi Boshnakov <georgi.boshnakov using manchester.ac.uk>:
> >
> > When the previous version has problems, you get an email listing them, followed with something like 'Did you fix them? Please Reply-All...'
> >
> > Maybe you missed the last phrase?
> >
> > Georgi Boshnakov
> >
> >
> >
> > Get Outlook for Android <https://aka.ms/AAb9ysg>
> > From: R-package-devel <r-package-devel-bounces using r-project.org> on behalf of Aisouda Hoshiyar <aisouda.hoshiyar using hsu-hh.de>
> > Sent: Tuesday, August 17, 2021 12:59:13 PM
> > To: r-package-devel using r-project.org <r-package-devel using r-project.org>
> > Subject: [R-pkg-devel] submitting package update failed, since old version out of date (?)
> >
> > Hi,
> >
> > submitting an update of our package ordPens failed (update version is 1.0.0), reporting the following:
> > Version: 1.0.0
> > ok
> > Version: 0.3-1
> > Check: R code for possible problems, Result: NOTE
> >   genRidge: no visible global function definition for 'plogis'
> >   ordGene: no visible global function definition for 'anova'
> >   ordGene: no visible global function definition for 'lm'
> >   ordSelect: no visible binding for global variable 'sd'
> >   ordSmooth: no visible binding for global variable 'sd'
> >   plot.ordPen: no visible global function definition for 'grey'
> >   plot.ordPen: no visible global function definition for 'devAskNewPage'
> >   plot.ordPen: no visible global function definition for 'lines'
> >   predict.ordPen: no visible global function definition for 'plogis'
> >   Undefined global functions or variables:
> >     anova devAskNewPage grey lines lm plogis sd
> >   Consider adding
> >     importFrom("grDevices", "devAskNewPage", "grey")
> >     importFrom("graphics", "lines")
> >     importFrom("stats", "anova", "lm", "plogis", "sd")
> >   to your NAMESPACE file.
> > Version: 0.3-1
> > Check: package dependencies, Result: NOTE
> >   Package suggested but not available for checking: ‘IsoGene’
> > https://cran.r-project.org/web/checks/check_results_ordPens.html <https://cran.r-project.org/web/checks/check_results_ordPens.html> <https://cran.r-project.org/web/checks/check_results_ordPens.html <https://cran.r-project.org/web/checks/check_results_ordPens.html>>
> >
> > https://win-builder.r-project.org/incoming_pretest/ordPens_1.0.0_20210817_114846/Debian/ <https://win-builder.r-project.org/incoming_pretest/ordPens_1.0.0_20210817_114846/Debian/> <https://win-builder.r-project.org/incoming_pretest/ordPens_1.0.0_20210817_114846/Debian/ <https://win-builder.r-project.org/incoming_pretest/ordPens_1.0.0_20210817_114846/Debian/>>
> >
> > But these are exactly the new changes that we already took care of in the updated version 1.0.0
> > The previous version 0.3-1 is from 2015 and due to R updates, the old package won’t work any more.
> > That is exactly the reason for update version 1.0.0, were everything is fixed now.
> >
> > Also,
> > - there is a NOTE about change in maintainer, which is already stated in the cran-comments.md, and the previous maintainer sent an e-main to CRAN as well
> > - there is a NOTE saying 'Examples with CPU (user + system) or elapsed time > 10s‘
> > which is also stated in the cran-comments.md explaining that cross-validation examples are important for illustrating the package usage.
> >
> >
> > So is this a false positive?
> >
> > Best
> > Aisouda
> >
> >
> >
> >
> >
> >         [[alternative HTML version deleted]]
> >
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