[R-pkg-devel] NOTE from checking for detritus in the temp directory

[Applied Statistics Laboratory]

Dear Gábor,

Thanks so much for your suggestions. Now my problems are solved.

Best wishes,
CP


On Sun, Jul 5, 2020 at 9:52 AM Gábor Csárdi <csardi.gabor using gmail.com> wrote:

> URLs are fine, the problem is with opening external programs like a
> web browser or a PDF viewer. I think you do that here:
>
>
> https://github.com/AppliedStat/R/blob/8e4173da8917caf0f4f68d4056902075fb9013c2/rQCC/man/factors.cc.Rd#L118
>
> https://github.com/AppliedStat/R/blob/8e4173da8917caf0f4f68d4056902075fb9013c2/rQCC/man/rcc.Rd#L297
>
> Maybe at other places as well.
>
> If you want to open the vignette from the example, maybe you can try
> something like
>
> if (interactive()) vignette("factors.cc", package="rQCC")
>
> so it does not run in R CMD check.
>
> Gabor
>
> On Sun, Jul 5, 2020 at 12:51 AM Applied Statistics Laboratory
> <stat.pnu using gmail.com> wrote:
> >
> > Thanks Gábor,
> >
> > I removed all the URLs in the *.Rd files and resubmitted to CRAN.
> >
> > I got the same NOTE again as below:
> >
> > After removing the URLs in the *.Rd :
> >
> https://win-builder.r-project.org/incoming_pretest/rQCC_1.20.7_20200704_161730/Debian/00check.log
> >
> > Just in case, the below is the NOTE before removing the ULRs in the Rd:
> >
> https://win-builder.r-project.org/incoming_pretest/rQCC_1.20.7_20200702_112950/Debian/00check.log
> >
> > I have this trouble after adding vignettes.
> > So my guess is that this NOTE may be from vignette.
> > I checked the package using  rhub::check_for_cran  with all the
> platforms. They do not have this kind of issue.
> > Only CRAN produces this NOTE. My vignette is written in *.Rnw
> (essentially the same as LaTeX format).
> > When the vignette file is compiled, some aux files are generated. So, I
> think that CRAN may not delete aux files properly.
> >
> > Thanks,
> > CP
> >
> >
> >
> > On Sat, Jul 4, 2020 at 9:48 PM Gábor Csárdi <csardi.gabor using gmail.com>
> wrote:
> >>
> >> Most likely this is because you start a web browser in your examples
> >> or tests. Try to find where that happens, and don't run it that
> >> example or test case on CRAN.
> >>
> >> Gabor
> >>
> >> On Sat, Jul 4, 2020 at 1:46 PM Applied Statistics Laboratory
> >> <stat.pnu using gmail.com> wrote:
> >> >
> >> > Dear All,
> >> >
> >> > I got a NOTE from CRAN:
> >> >
> >> >
> >> >
> >> >
> >> >
> >> >
> >> >
> >> > ** checking for detritus in the temp directory ... NOTEFound the
> following
> >> > files/directories:  ‘calibre_4.99.6_tmp_lezpx205’
> >> > ‘calibre_4.99.6_tmp_mzjswhrh’  ‘calibre_4.99.6_tmp_zc8txrmi’
> >> > ‘calibre_4.99.6_tmp_zw0pp8wj’* DONEStatus: 1 NOTE*
> >> > Here is the log file for the CRAN check. (At the bottom, you can find
> the
> >> > above NOTE.)
> >> >
> >> >
> https://win-builder.r-project.org/incoming_pretest/rQCC_1.20.7_20200702_112950/Debian/00check.log
> >> >
> >> >
> >> >
> >> > When I checked my package, there was no detritus in the temp dir. I
> tested
> >> > my package using the command below:
> >> >
> >> >  > rhub::platforms()
> >> >  > rhub::check_for_cran(platforms = "debian-clang-devel")
> >> >  > rhub::check_for_cran(platforms = "debian-gcc-devel" )
> >> >  > rhub::check_for_cran(platforms = "debian-gcc-devel-nold" )
> >> >  > rhub::check_for_cran(platforms = "debian-gcc-patched" )
> >> >  > rhub::check_for_cran(platforms = "debian-gcc-release" )
> >> >
> >> > As shown below, it says "OK"
> >> >
> >> >
> https://artifacts.r-hub.io/rQCC_1.20.7.tar.gz-66c588542824483db19cdc9130c715c4/
> >> >
> >> > Please help me if you know how to fix the detritus issue in the temp
> dir.
> >> >
> >> > Thanks,
> >> > CP
> >> >
> >> >         [[alternative HTML version deleted]]
> >> >
> >> > ______________________________________________
> >> > R-package-devel using r-project.org mailing list
> >> > https://stat.ethz.ch/mailman/listinfo/r-package-devel
> >
> >
> >
> > --
> > Applied Statistics Laboratory
> >
> > https://sites.google.com/view/appliedstatlab
>

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