[R-pkg-devel] NOTE from checking for detritus in the temp directory

[Gábor Csárdi]

URLs are fine, the problem is with opening external programs like a
web browser or a PDF viewer. I think you do that here:

https://github.com/AppliedStat/R/blob/8e4173da8917caf0f4f68d4056902075fb9013c2/rQCC/man/factors.cc.Rd#L118
https://github.com/AppliedStat/R/blob/8e4173da8917caf0f4f68d4056902075fb9013c2/rQCC/man/rcc.Rd#L297

Maybe at other places as well.

If you want to open the vignette from the example, maybe you can try
something like

if (interactive()) vignette("factors.cc", package="rQCC")

so it does not run in R CMD check.

Gabor

On Sun, Jul 5, 2020 at 12:51 AM Applied Statistics Laboratory
<stat.pnu using gmail.com> wrote:
>
> Thanks Gábor,
>
> I removed all the URLs in the *.Rd files and resubmitted to CRAN.
>
> I got the same NOTE again as below:
>
> After removing the URLs in the *.Rd :
> https://win-builder.r-project.org/incoming_pretest/rQCC_1.20.7_20200704_161730/Debian/00check.log
>
> Just in case, the below is the NOTE before removing the ULRs in the Rd:
> https://win-builder.r-project.org/incoming_pretest/rQCC_1.20.7_20200702_112950/Debian/00check.log
>
> I have this trouble after adding vignettes.
> So my guess is that this NOTE may be from vignette.
> I checked the package using  rhub::check_for_cran  with all the platforms. They do not have this kind of issue.
> Only CRAN produces this NOTE. My vignette is written in *.Rnw (essentially the same as LaTeX format).
> When the vignette file is compiled, some aux files are generated. So, I think that CRAN may not delete aux files properly.
>
> Thanks,
> CP
>
>
>
> On Sat, Jul 4, 2020 at 9:48 PM Gábor Csárdi <csardi.gabor using gmail.com> wrote:
>>
>> Most likely this is because you start a web browser in your examples
>> or tests. Try to find where that happens, and don't run it that
>> example or test case on CRAN.
>>
>> Gabor
>>
>> On Sat, Jul 4, 2020 at 1:46 PM Applied Statistics Laboratory
>> <stat.pnu using gmail.com> wrote:
>> >
>> > Dear All,
>> >
>> > I got a NOTE from CRAN:
>> >
>> >
>> >
>> >
>> >
>> >
>> >
>> > ** checking for detritus in the temp directory ... NOTEFound the following
>> > files/directories:  ‘calibre_4.99.6_tmp_lezpx205’
>> > ‘calibre_4.99.6_tmp_mzjswhrh’  ‘calibre_4.99.6_tmp_zc8txrmi’
>> > ‘calibre_4.99.6_tmp_zw0pp8wj’* DONEStatus: 1 NOTE*
>> > Here is the log file for the CRAN check. (At the bottom, you can find the
>> > above NOTE.)
>> >
>> > https://win-builder.r-project.org/incoming_pretest/rQCC_1.20.7_20200702_112950/Debian/00check.log
>> >
>> >
>> >
>> > When I checked my package, there was no detritus in the temp dir. I tested
>> > my package using the command below:
>> >
>> >  > rhub::platforms()
>> >  > rhub::check_for_cran(platforms = "debian-clang-devel")
>> >  > rhub::check_for_cran(platforms = "debian-gcc-devel" )
>> >  > rhub::check_for_cran(platforms = "debian-gcc-devel-nold" )
>> >  > rhub::check_for_cran(platforms = "debian-gcc-patched" )
>> >  > rhub::check_for_cran(platforms = "debian-gcc-release" )
>> >
>> > As shown below, it says "OK"
>> >
>> > https://artifacts.r-hub.io/rQCC_1.20.7.tar.gz-66c588542824483db19cdc9130c715c4/
>> >
>> > Please help me if you know how to fix the detritus issue in the temp dir.
>> >
>> > Thanks,
>> > CP
>> >
>> >         [[alternative HTML version deleted]]
>> >
>> > ______________________________________________
>> > R-package-devel using r-project.org mailing list
>> > https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
>
>
> --
> Applied Statistics Laboratory
>
> https://sites.google.com/view/appliedstatlab