[R-pkg-devel] [External] Re: Packages required and available but unsuitable versions: Error

[Agarwal, Divyansh]

Hi Martin,

Thanks so much. Removing the version dependencies for those 3 packages fixed the ERROR but I'm now having an issue with these WARNINGS:
Warning: replacing previous import ‘AnnotationDbi::select’ by ‘MASS::select’ when loading ‘multicross’
Warning: replacing previous import ‘Matrix::cov2cor’ by ‘stats::cov2cor’ when loading ‘multicross’
Warning: replacing previous import ‘Matrix::toeplitz’ by ‘stats::toeplitz’ when loading ‘multicross’
Warning: replacing previous import ‘nbpMatching::quantile’ by ‘stats::quantile’ when loading ‘multicross’
Warning: replacing previous import ‘Matrix::update’ by ‘stats::update’ when loading ‘multicross’

Looking at a couple of forums I thought putting stats and MASS under "Depends" in the DESCRIPTION file would address these warnings, but they still come up. For reference, my DESCRIPTION file is –

Depends:
          stats (>= 3.5.0),
          MASS (>= 7.3-49),
Encoding: UTF-8
 Imports:
          nbpMatching (>= 1.5.1),
          crossmatch (>= 1.3-1),
          Matrix (>= 1.2-17),
          org.Hs.eg.db (>= 3.6.0),
          org.Mm.eg.db (>= 3.6.0),
          org.Ce.eg.db (>= 3.6.0),
          Seurat (>= 3.0.0),
          AnnotationDbi (>= 1.42.1)

Please let me know what you'd recommend. Thank you again for taking the time to offer your help, and am really grateful for your suggestions. 

Sincerely,
Divyansh


On 9/23/19, 7:44 AM, "Martin Morgan" <mtmorgan.bioc using gmail.com> wrote:

    Probably the easiest 'solution' is to remove the version dependencies, e.g., 'org.Hs.eg.db, org.Mm.eg.db, ...'.
    
    I suspect that the root cause is that the Windows builders do not have the correct version of these packages installed for the version of R in use, perhaps because the version of the package BiocVersion (it should be 3.10.1 in R-devel) is incorrect.
    
    Martin Morgan
    Bioconductor
    
    On 9/23/19, 6:06 AM, "R-package-devel on behalf of Agarwal, Divyansh" <r-package-devel-bounces using r-project.org on behalf of Divyansh.Agarwal using pennmedicine.upenn.edu> wrote:
    
        Dear R developers community,
        
        I’m trying to build and submit an R package to CRAN but keep getting the following error:
        Packages required and available but unsuitable versions:
          'org.Hs.eg.db', 'org.Mm.eg.db', 'org.Ce.eg.db'
        
        The DESCRIPTION file for my package includes the following:
        Depends:
          R (>= 3.5.0),
          stats (>= 3.5.0),
          MASS (>= 7.3-49),
        Encoding: UTF-8
        Imports:
          nbpMatching (>= 1.5.1),
          crossmatch (>= 1.3-1),
          Matrix (>= 1.2-17),
          org.Hs.eg.db (>= 3.6.0),
          org.Mm.eg.db (>= 3.6.0),
          org.Ce.eg.db (>= 3.6.0),
          Seurat (>= 3.0.0),
          AnnotationDbi (>= 1.42.1)
        
        The details of the error log are here: <https://win-builder.r-project.org/incoming_pretest/multicross_2.0.0_20190923_044655/>
        
        I’ve tried a few different things such as specifying an R version under “Depends” or updating the version for the “org.” packages to the latest version (>=3.8) but I haven’t been able to resolve the error and warnings shown in the error log.  I would be really grateful to you if you could kindly advise a potential solution for how to possibly fix this error.
        
        Thanks a lot in advance!
        Divyansh
        
        
        
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