[R-pkg-devel] dependency on a bioconductor package

[Morgan, Martin]

(don't forget to 'reply all', so that others may benefit / contribute to 
the conversation).

You or one of the packages your package depends on must Depend: or 
Import: BiocInstaller. If it is your package, then you should no longer 
do so. If it is one of the packages your package depends on, then the 
responsible thing to do is to contact the author of that package and 
indicate that they should update their package to no longer depend on 
BiocInstaller.

I do not know how the CRAN team will view this warning; I would guess 
that, if it is not directly under your control, then they will not be 
overly concerned about it.

Martin

On 10/5/18 1:35 PM, maialba using alumni.uv.es wrote:
> Hello Morgan,
> 
> thank you for the replay but, how should I solve the problem in my package? I did install CAMERA using BiocManager in my computer and my package works fine. I do not get any warnings when I run R CDM check but the problem appears when I try to submit it to CRAN.
> 
> Maribel
> 
> 
>> BiocInstaller has been replaced by the CRAN package BiocManager; the
>> appropriate way to install Bioconductor packages is
>> BiocManager::install(). See the vignette at
>>
>> https://cran.r-project.org/web/packages/BiocManager/vignettes/BiocManagerhtml
>>
>> Martin
>>
>>
>> On 10/5/18 5:36 AM, maialba using alumni.uv.es wrote:
>>> I do not know how to solve this warning. I guess it comes from the package dependency on CAMERA (bioconductor) but I can´t solve it.
>>>
>>> https://win-builder.r-project.org/incoming_pretest/LipidMS_1.0.0_20181005_103151/Windows/00check.log>
>>>
>>> ______________________________________________
>>> R-package-devel using r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>>
>> ______________________________________________
>> R-package-devel using r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>>
> 
>