[R-pkg-devel] CRAN Package error

[Andrew Holding]

Dear Uwe,

I've tried again today and still get the same error Any suggestions of a
likely cause? I'm currently not even sure how to chase it up if it is a
fault at my end.

Thanks in advance,

Andy

On Fri, 1 Dec 2017 at 10:02 Andrew Holding <anh25 at cam.ac.uk> wrote:

> Dear Henrik,
>
> My undesranding is that rdevel testing servers using are ahead of the
> current Bioconductor release. However; I’m not confident I am correct.
>
> Andy
>
> On Thu, 30 Nov 2017 at 23:26 Henrik Bengtsson <henrik.bengtsson at gmail.com>
> wrote:
>
>> >> On 30.11.2017 12:52, Andrew Holding wrote:
>> >> [...] I know the new Bioconductor on devel is unstable [...]
>>
>> Does CRAN support packages in the Bioconductor *devel* repository?
>>
>> /Henrik
>>
>> On Thu, Nov 30, 2017 at 2:54 PM, Andrew Holding <anh25 at cam.ac.uk> wrote:
>> > Dear Uwe,
>> >
>> > Just submitted the package again and got the same error. I’ve copied it
>> > below for reference.
>> >
>> > Andy
>> >
>> >  Found the following significant warnings:
>> >
>> >   Warning: namespace 'BiocFileCache' is not available and has been
>> replaced
>> >   Warning: namespace 'AnnotationFilter' is not available and has been
>> replaced
>> >   Warning: namespace 'Organism.dplyr' is not available and has been
>> replaced
>> > See 'd:/RCompile/CRANincoming/R-devel/Brundle.Rcheck/00install.out' for
>> details.
>> >
>> >
>> > On Thu, 30 Nov 2017 at 22:18 Uwe Ligges <
>> ligges at statistik.tu-dortmund.de>
>> > wrote:
>> >
>> >> Have you submitted a second time? Sounds like BioC wasa uodated on the
>> >> build machine when you submitted.
>> >>
>> >> Best,
>> >> Uwe Ligges
>> >>
>> >>
>> >>
>> >> On 30.11.2017 12:52, Andrew Holding wrote:
>> >> > Hi all,
>> >> >
>> >> > I’m trying to upload a new version of my package and it was
>> automatically
>> >> > bounced because of the following warnings:
>> >> >
>> >> > Warning: namespace 'BiocFileCache' is not available and has been
>> replaced
>> >> >
>> >> > Warning: namespace 'AnnotationFilter' is not available and has been
>> >> replaced
>> >> >
>> >> > Warning: namespace 'Organism.dplyr' is not available and has been
>> >> replaced
>> >> >
>> >> >
>> >> > Theses all seem to be related to the bioconductor annotation in one
>> of
>> >> the
>> >> > loaded packages. I know the new Bioconductor on devel is unstable
>> but I
>> >> > thought I should check before suggesting the pretest rejection was a
>> >> false
>> >> > positive to see if there was a resolution.
>> >> >
>> >> > Cheers,
>> >> >
>> >> > Andy
>> >> >
>> >>
>> > --
>> > Dr Andrew Holding
>> > Fellow of Biochemistry / Senior Research Associate
>> > Downing College / Cancer Research UK Cambridge Institute
>> > CRUK CI: 01223 769696
>> > Mobile: 07595 666459
>> >
>> >         [[alternative HTML version deleted]]
>> >
>> > ______________________________________________
>> > R-package-devel at r-project.org mailing list
>> > https://stat.ethz.ch/mailman/listinfo/r-package-devel
>>
> --
> Dr Andrew Holding
> Fellow of Biochemistry / Senior Research Associate
> Downing College / Cancer Research UK Cambridge Institute
> CRUK CI: 01223 769696
> Mobile: 07595 666459
>
-- 
Dr Andrew Holding
Fellow of Biochemistry / Senior Research Associate
Downing College / Cancer Research UK Cambridge Institute
CRUK CI: 01223 769696
Mobile: 07595 666459

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