[R-pkg-devel] CRAN Package error

[Andrew Holding]

Dear Henrik,

My undesranding is that rdevel testing servers using are ahead of the
current Bioconductor release. However; I’m not confident I am correct.

Andy

On Thu, 30 Nov 2017 at 23:26 Henrik Bengtsson <henrik.bengtsson at gmail.com>
wrote:

> >> On 30.11.2017 12:52, Andrew Holding wrote:
> >> [...] I know the new Bioconductor on devel is unstable [...]
>
> Does CRAN support packages in the Bioconductor *devel* repository?
>
> /Henrik
>
> On Thu, Nov 30, 2017 at 2:54 PM, Andrew Holding <anh25 at cam.ac.uk> wrote:
> > Dear Uwe,
> >
> > Just submitted the package again and got the same error. I’ve copied it
> > below for reference.
> >
> > Andy
> >
> >  Found the following significant warnings:
> >
> >   Warning: namespace 'BiocFileCache' is not available and has been
> replaced
> >   Warning: namespace 'AnnotationFilter' is not available and has been
> replaced
> >   Warning: namespace 'Organism.dplyr' is not available and has been
> replaced
> > See 'd:/RCompile/CRANincoming/R-devel/Brundle.Rcheck/00install.out' for
> details.
> >
> >
> > On Thu, 30 Nov 2017 at 22:18 Uwe Ligges <ligges at statistik.tu-dortmund.de
> >
> > wrote:
> >
> >> Have you submitted a second time? Sounds like BioC wasa uodated on the
> >> build machine when you submitted.
> >>
> >> Best,
> >> Uwe Ligges
> >>
> >>
> >>
> >> On 30.11.2017 12:52, Andrew Holding wrote:
> >> > Hi all,
> >> >
> >> > I’m trying to upload a new version of my package and it was
> automatically
> >> > bounced because of the following warnings:
> >> >
> >> > Warning: namespace 'BiocFileCache' is not available and has been
> replaced
> >> >
> >> > Warning: namespace 'AnnotationFilter' is not available and has been
> >> replaced
> >> >
> >> > Warning: namespace 'Organism.dplyr' is not available and has been
> >> replaced
> >> >
> >> >
> >> > Theses all seem to be related to the bioconductor annotation in one of
> >> the
> >> > loaded packages. I know the new Bioconductor on devel is unstable but
> I
> >> > thought I should check before suggesting the pretest rejection was a
> >> false
> >> > positive to see if there was a resolution.
> >> >
> >> > Cheers,
> >> >
> >> > Andy
> >> >
> >>
> > --
> > Dr Andrew Holding
> > Fellow of Biochemistry / Senior Research Associate
> > Downing College / Cancer Research UK Cambridge Institute
> > CRUK CI: 01223 769696
> > Mobile: 07595 666459
> >
> >         [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-package-devel at r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
-- 
Dr Andrew Holding
Fellow of Biochemistry / Senior Research Associate
Downing College / Cancer Research UK Cambridge Institute
CRUK CI: 01223 769696
Mobile: 07595 666459

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