[R-pkg-devel] CRAN Package error

[Henrik Bengtsson]

>> On 30.11.2017 12:52, Andrew Holding wrote:
>> [...] I know the new Bioconductor on devel is unstable [...]

Does CRAN support packages in the Bioconductor *devel* repository?

/Henrik

On Thu, Nov 30, 2017 at 2:54 PM, Andrew Holding <anh25 at cam.ac.uk> wrote:
> Dear Uwe,
>
> Just submitted the package again and got the same error. I’ve copied it
> below for reference.
>
> Andy
>
>  Found the following significant warnings:
>
>   Warning: namespace 'BiocFileCache' is not available and has been replaced
>   Warning: namespace 'AnnotationFilter' is not available and has been replaced
>   Warning: namespace 'Organism.dplyr' is not available and has been replaced
> See 'd:/RCompile/CRANincoming/R-devel/Brundle.Rcheck/00install.out' for details.
>
>
> On Thu, 30 Nov 2017 at 22:18 Uwe Ligges <ligges at statistik.tu-dortmund.de>
> wrote:
>
>> Have you submitted a second time? Sounds like BioC wasa uodated on the
>> build machine when you submitted.
>>
>> Best,
>> Uwe Ligges
>>
>>
>>
>> On 30.11.2017 12:52, Andrew Holding wrote:
>> > Hi all,
>> >
>> > I’m trying to upload a new version of my package and it was automatically
>> > bounced because of the following warnings:
>> >
>> > Warning: namespace 'BiocFileCache' is not available and has been replaced
>> >
>> > Warning: namespace 'AnnotationFilter' is not available and has been
>> replaced
>> >
>> > Warning: namespace 'Organism.dplyr' is not available and has been
>> replaced
>> >
>> >
>> > Theses all seem to be related to the bioconductor annotation in one of
>> the
>> > loaded packages. I know the new Bioconductor on devel is unstable but I
>> > thought I should check before suggesting the pretest rejection was a
>> false
>> > positive to see if there was a resolution.
>> >
>> > Cheers,
>> >
>> > Andy
>> >
>>
> --
> Dr Andrew Holding
> Fellow of Biochemistry / Senior Research Associate
> Downing College / Cancer Research UK Cambridge Institute
> CRUK CI: 01223 769696
> Mobile: 07595 666459
>
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>
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