[R-pkg-devel] no visible global function definition for ‘par’

[Kasper Daniel Hansen]

On Mon, Jan 30, 2017 at 12:04 PM, Cathy Lee Gierke <leegi001 at umn.edu> wrote:

> That is the obvious solution, but it doesn't seem correct:  I have pdf
> included in the description, and namespace files, yet it is being called
> out.  Additionally, aren't most of these pkgs in the packages included by
> default?
>

No, they are not. Read the documentation and see the error

And up until yesterday, I didn't have any of these problems.  I've been
> compiling and running this for several years.  But now I want to release to
> CRAN, so I've been fixing minor issues....and suddenly this mass of Notes.
>

I have no idea what you did previously to ignore this. But the
behaviour/error you see is always caused by an incomplete NAMESPACE; its
very common.

Perhaps follow the advice from all the other replies.

Best,
Kasper



> Thank you,
>
> Cathy Lee Gierke
>
>
> *“Darkness cannot drive out darkness: only light can do that. Hate cannot
> drive out hate: only love can do that.” *
> *“The arc of the moral universe is long, but it bends towards justice.”*
> *“Nothing in the world is more dangerous than sincere ignorance and
> conscientious stupidity.” *
> *“Never forget that everything Hitler did in Germany was legal.”   *
> *“Forgiveness is not an occasional act, it is a constant attitude.” *
> *“Injustice anywhere is a threat to justice everywhere.”  *
>
> ― Martin Luther King Jr.
>
> <http://www.goodreads.com/author/show/23924.Martin_Luther_King_Jr_>
>
> On Mon, Jan 30, 2017 at 10:52 AM, Brian G. Peterson <brian at braverock.com>
> wrote:
>
> > The error you reference below is pretty clear, I think.
> >
> > You need to add imports for all the functions you're using from other
> > packages.
> >
> > See: https://cran.r-project.org/doc/manuals/r-release/R-exts.
> > html#Specifying-imports-and-exports
> >
> > Regards,
> >
> > Brian
> >
> >
> > --
> > Brian G. Petersonhttp://braverock.com/brian/
> > Ph: 773-459-4973 <(773)%20459-4973>
> > IM: bgpbraverock
> >
> >
> > On Mon, 2017-01-30 at 10:39 -0600, Cathy Lee Gierke wrote:
> >
> > Yes, that seemed to get rid of the NOTE....but it doesn't seem to make
> > much difference other than that.  i.e., it seems to process the same
> using
> > CATkit vs CATkit_2.06.tar.gz!
> >
> > Here is the main error that I am getting.  I just upgraded to the latest
> R
> > version, fyi.
> >
> > Everything was fine, a few minor warnings...now this.  Description and
> > namespace are proper.  These pkgs should all be part of the R base,
> aren't
> > they? Anyone know why I should get these errors?  Thanks!
> >
> > * checking R code for possible problems ... NOTE
> >
> > Actogram: no visible global function definition for ‘par’
> >
> > Actogram: no visible global function definition for ‘barplot’
> >
> > Actogram: no visible global function definition for ‘box’
> >
> > Actogram: no visible global function definition for ‘text’
> >
> > Actogram: no visible global function definition for ‘mtext’
> >
> > Actogram: no visible binding for global variable ‘end’
> >
> > AutoCorr: no visible global function definition for ‘par’
> >
> > AutoCorr: no visible global function definition for ‘layout’
> >
> > AutoCorr: no visible global function definition for ‘acf’
> >
> > AutoCorr: no visible global function definition for ‘abline’
> >
> > AutoCorr: no visible global function definition for ‘title’
> >
> > AutoCorr: no visible global function definition for ‘mtext’
> >
> > AutoCorr: no visible global function definition for ‘var’
> >
> > AutoCorr: no visible binding for global variable ‘end’
> >
> > CATCosinor: no visible global function definition for ‘par’
> >
> > CATCosinor: no visible global function definition for ‘pdf’
> >
> > CATCosinor: no visible global function definition for ‘jpeg’
> >
> > CATCosinor: no visible global function definition for ‘png’
> >
> > CATCosinor: no visible global function definition for ‘tiff’
> >
> > ......... A zillion more for every function I have......
> >
> > periCosinor: no visible global function definition for ‘par’
> >
> > periCosinor: no visible global function definition for ‘fft’
> >
> > Undefined global functions or variables:
> >
> >   TukeyHSD abline acf aov as.raster axis barplot box boxplot ccf
> >
> >   coefficients dev.cur dev.off drop1 end fft gray heat.colors image
> >
> >   jpeg layout legend lines median model.tables mtext na.action na.omit
> >
> >   palette par pdf pf plot plot.new png points rainbow rasterImage
> >
> >   read.table str strwidth tail terrain.colors text tiff title ts var
> >
> >   write.table
> >
> > Consider adding
> >
> >   importFrom("grDevices", "as.raster", "dev.cur", "dev.off", "gray",
> >
> >              "heat.colors", "jpeg", "palette", "pdf", "png", "rainbow",
> >
> >              "terrain.colors", "tiff")
> >
> >   importFrom("graphics", "abline", "axis", "barplot", "box", "boxplot",
> >
> >              "image", "layout", "legend", "lines", "mtext", "par",
> >
> >              "plot", "plot.new", "points", "rasterImage", "strwidth",
> >
> >              "text", "title")
> >
> >   importFrom("stats", "TukeyHSD", "acf", "aov", "ccf", "coefficients",
> >
> >              "drop1", "end", "fft", "median", "model.tables",
> >
> >              "na.action", "na.omit", "pf", "ts", "var")
> >
> >   importFrom("utils", "read.table", "str", "tail", "write.table")
> >
> > to your NAMESPACE file.
> >
> > Cathy Lee Gierke
> >
> >
> > *“Darkness cannot drive out darkness: only light can do that. Hate cannot
> > drive out hate: only love can do that.” *
> > *“The arc of the moral universe is long, but it bends towards justice.”*
> > *“Nothing in the world is more dangerous than sincere ignorance and
> > conscientious stupidity.” *
> > *“Never forget that everything Hitler did in Germany was legal.”   *
> > *“Forgiveness is not an occasional act, it is a constant attitude.” *
> > *“Injustice anywhere is a threat to justice everywhere.”  *
> >
> > ― Martin Luther King Jr.
> >
> > <http://www.goodreads.com/author/show/23924.Martin_Luther_King_Jr_>
> >
> > On Mon, Jan 30, 2017 at 10:05 AM, Brian G. Peterson <brian at braverock.com
> >
> > wrote:
> >
> > On Mon, 2017-01-30 at 09:45 -0600, Cathy Lee Gierke wrote:
> > >  building ‘CATkit_2.06.tar.gz’
> >
> > R CMD build creates a tarball
> >
> > > x-134-84-0-217:CATkit user$ *R CMD check CATkit*
> >
> > but you are checknig the directory, not the tarball.
> >
> > do
> >
> > R CMD check CATkit_2.06.tar.gz
> >
> > instead.
> >
> > Regards,
> >
> > Brian
> >
> >
> >
>
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