[R] p values from GLM

[Bert Gunter]

... of course, whether one **should** get them is questionable...

http://www.nature.com/news/statisticians-issue-warning-over-misuse-of-p-values-1.19503#/ref-link-1


Cheers,
Bert



Bert Gunter

"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )


On Fri, Apr 1, 2016 at 3:26 PM, Duncan Murdoch <murdoch.duncan at gmail.com> wrote:
> On 01/04/2016 6:14 PM, John Sorkin wrote:
>> How can I get the p values from a glm ? I want to get the p values so I
>> can add them to a custom report
>>
>>
>>   fitwean<-
>> glm(data[,"JWean"]~data[,"Group"],data=data,family=binomial(link ="logit"))
>>   summary(fitwean)             # This lists the coefficeints, SEs, z and p
>> values, but I can't isolate the pvalues.
>>   names(summary(fitwean))  # I see the coefficients, but not the p values
>>   names(fitmens)                  # p values are not found here.
>
> Doesn't summary(fitwean) give a matrix? Then it's
> colnames(summary(fitwean)$coefficients) you want, not names(fitwean).
>
> Duncan Murdoch
>
> P.S. If you had given a reproducible example, I'd try it myself.
>
>
>
>>
>> Thank you!
>> John
>>
>> John David Sorkin M.D., Ph.D.
>> Professor of Medicine
>> Chief, Biostatistics and Informatics
>> University of Maryland School of Medicine Division of Gerontology and
>> Geriatric Medicine
>> Baltimore VA Medical Center
>> 10 North Greene Street
>> GRECC (BT/18/GR)
>> Baltimore, MD 21201-1524
>> (Phone) 410-605-7119
>> (Fax) 410-605-7913 (Please call phone number above prior to faxing)
>>
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>
> ______________________________________________
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