[R] how to include --configure-args= in R CMD INSTALL

[Prof Brian Ripley]

--configure-args are for Unix: you are on Windows.

On 15/10/2012 11:47, sagarnikam123 wrote:
> I am installing RMySQL_0.9-3.tar.gz pkg on windows-7 64 bit machine as:---
>
> C:\Users\trendwise>  R CMD INSTALL
> --configure-args='--with-mysql-inc="C:\\Program Files\\MySQL\\MySQL Server
> 5.5\\include"' "C:\\Users\\trendwise\\Downloads\\RMySQL_0.9-3.tar.gz"
>
> * installing to library 'C:/Users/trendwise/Documents/R/win-library/2.14'
> * installing *source* package 'RMySQL' ...
> ** package 'RMySQL' successfully unpacked and MD5 sums checked
> checking for $MYSQL_HOME... C:\Program Files\MySQL\MySQL Server 5.5\.;
> cygwin warning:
>    MS-DOS style path detected: C:\Program
>    Preferred POSIX equivalent is: /cygdrive/c/Program
>    CYGWIN environment variable option "nodosfilewarning" turns off this
> warning.
>    Consult the user's guide for more details about POSIX paths:
>      http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
> test: Files\MySQL\MySQL: unknown operand
> ** libs
> Warning: this package has a non-empty 'configure.win' file,
> so building only the main architecture
>
> cygwin warning:
>    MS-DOS style path detected: C:/PROGRA~1/R/R-214~1.2/etc/x64/Makeconf
>    Preferred POSIX equivalent is:
> /cygdrive/c/PROGRA~1/R/R-214~1.2/etc/x64/Makeconf
>    CYGWIN environment variable option "nodosfilewarning" turns off this
> warning.
>    Consult the user's guide for more details about POSIX paths:
>      http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
> gcc -m64 -I"C:/PROGRA~1/R/R-214~1.2/include" -I"C:\Program Files\MySQL\MySQL
> Server 5.5\.;"/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"
> -O2 -Wall  -std=gnu99 -mtune=core2 -c RS-DBI.c -o RS-DBI.o
> RS-DBI.c: In function 'RS_na_set':
> RS-DBI.c:1219:11: warning: variable 'c' set but not used
> [-Wunused-but-set-variable]
> gcc -m64 -I"C:/PROGRA~1/R/R-214~1.2/include" -I"C:\Program Files\MySQL\MySQL
> Server 5.5\.;"/include    -I"d:/RCompile/CRANpkg/extr
> alibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c RS-MySQL.c
> -o RS-MySQL.o
> In file included from RS-MySQL.c:22:0:
> RS-MySQL.h:32:19: fatal error: mysql.h: No such file or directory
> compilation terminated.
> make: *** [RS-MySQL.o] Error 1
> ERROR: compilation failed for package 'RMySQL'
> * removing 'C:/Users/trendwise/Documents/R/win-library/2.14/RMySQL'
> =======================================================================================================
> its giving this error,
> RS-MySQL.h:32:19: fatal error: mysql.h: No such file or directory
> i want to include mysql.h path in either RCMD INSTALL  or
> install.packages() command
>
>
>
>
>
>
>
> -----
> Sagar Nikam
> B.Pharm, M.Sc(Bioinformatics)
> Software Engineer (Data Research Analyst )
> Trendwise Analytics,Bangalore
> India
> --
> View this message in context: http://r.789695.n4.nabble.com/how-to-include-configure-args-in-R-CMD-INSTALL-tp4646220.html
> Sent from the R help mailing list archive at Nabble.com.
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>


-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595