[R] how to include --configure-args= in R CMD INSTALL

sagarnikam123 sagarnikam123 at gmail.com
Mon Oct 15 12:47:10 CEST 2012


I am installing RMySQL_0.9-3.tar.gz pkg on windows-7 64 bit machine as:---

C:\Users\trendwise>  R CMD INSTALL
--configure-args='--with-mysql-inc="C:\\Program Files\\MySQL\\MySQL Server
5.5\\include"' "C:\\Users\\trendwise\\Downloads\\RMySQL_0.9-3.tar.gz"

* installing to library 'C:/Users/trendwise/Documents/R/win-library/2.14'
* installing *source* package 'RMySQL' ...
** package 'RMySQL' successfully unpacked and MD5 sums checked
checking for $MYSQL_HOME... C:\Program Files\MySQL\MySQL Server 5.5\.;
cygwin warning:
  MS-DOS style path detected: C:\Program
  Preferred POSIX equivalent is: /cygdrive/c/Program
  CYGWIN environment variable option "nodosfilewarning" turns off this
warning.
  Consult the user's guide for more details about POSIX paths:
    http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
test: Files\MySQL\MySQL: unknown operand
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture

cygwin warning:
  MS-DOS style path detected: C:/PROGRA~1/R/R-214~1.2/etc/x64/Makeconf
  Preferred POSIX equivalent is:
/cygdrive/c/PROGRA~1/R/R-214~1.2/etc/x64/Makeconf
  CYGWIN environment variable option "nodosfilewarning" turns off this
warning.
  Consult the user's guide for more details about POSIX paths:
    http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
gcc -m64 -I"C:/PROGRA~1/R/R-214~1.2/include" -I"C:\Program Files\MySQL\MySQL
Server 5.5\.;"/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"    
-O2 -Wall  -std=gnu99 -mtune=core2 -c RS-DBI.c -o RS-DBI.o
RS-DBI.c: In function 'RS_na_set':
RS-DBI.c:1219:11: warning: variable 'c' set but not used
[-Wunused-but-set-variable]
gcc -m64 -I"C:/PROGRA~1/R/R-214~1.2/include" -I"C:\Program Files\MySQL\MySQL
Server 5.5\.;"/include    -I"d:/RCompile/CRANpkg/extr
alibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c RS-MySQL.c
-o RS-MySQL.o
In file included from RS-MySQL.c:22:0:
RS-MySQL.h:32:19: fatal error: mysql.h: No such file or directory
compilation terminated.
make: *** [RS-MySQL.o] Error 1
ERROR: compilation failed for package 'RMySQL'
* removing 'C:/Users/trendwise/Documents/R/win-library/2.14/RMySQL'
=======================================================================================================
its giving this error,
RS-MySQL.h:32:19: fatal error: mysql.h: No such file or directory
i want to include mysql.h path in either RCMD INSTALL  or  
install.packages() command







-----
Sagar Nikam 
B.Pharm, M.Sc(Bioinformatics)
Software Engineer (Data Research Analyst )
Trendwise Analytics,Bangalore 
India
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