[R] RSNPper SNPinfo and making it handle a vector
Farrel Buchinsky
fjbuch at gmail.com
Mon Feb 5 20:35:27 CET 2007
Doesn't this provide a programmer with the information that he would need.
http://www.ncbi.nlm.nih.gov/projects/SNP/SNPeutils.htm
"Vincent Carey 525-2265" <stvjc at channing.harvard.edu> wrote in message
news:Pine.GSO.4.58.0702050729030.25170 at capecod.bwh.harvard.edu...
> another good question. dbSNP did not, at the time RSNPper was created,
> provide easy programmatic access to such nicely curated/amalgamated data
> from various
> sources. i suspect that is still the case. but there may be other web
> services
> providing information on SNPs, where a clear specification exists
> regarding what you
> issue and what you get back, and what you get back tells you things like
> SNP
> location, role, relation to genes, population frequency, etc.. if you
> find
> one and let me know about it i will consider writing another package to
> retrieve
> SNP-related metadata.
>
> you might look at the biomaRt package in Bioconductor and see if its snp
> query resolution
> facilities meet your needs.
>
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