[R] RSNPper SNPinfo and making it handle a vector
Farrel Buchinsky
fjbuch at gmail.com
Mon Feb 19 04:07:58 CET 2007
I tried biomaRt
library(biomaRt)
ensnp = useMart("snp", dataset = "hsapiens_snp")
snp = getSNP(chromosome = 17, start = 73649033, end = 73679033, mart =
ensnp)
show(snp)
Gave me a nice table but it did not seem to permit starting from the point
of knowing the SNP and entering a list of rs######. I guess I could always
fudge around. But it does not provide the one-stop I was looking for.
> you might look at the biomaRt package in Bioconductor and see if its snp
> query resolution
> facilities meet your needs.
More information about the R-help
mailing list